View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16642_high_7 (Length: 423)
Name: NF16642_high_7
Description: NF16642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16642_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 12 - 401
Target Start/End: Original strand, 15596602 - 15596991
Alignment:
| Q |
12 |
agagacgagtaagaaattttttaagcgccaagttcataaatgagaagactcaagtagtcgatgaagatgtagtaagagcatgatagacgtagttctacct |
111 |
Q |
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| T |
15596602 |
agagacgagtaagaaatttttgaagcgccaagttcaataatgagaagactcaagtagtcgatgaagatgcagtaagagcatgatagacgtagttctacct |
15596701 |
T |
|
| Q |
112 |
gactaagtcaagagagtttagaatcatctctagtatggtagtccggtagttcatctcagtaagcacaaggaatgtcagtcagctagaaaggagtcgtgtg |
211 |
Q |
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| T |
15596702 |
gagtaagtcaagagagtttagaatcgtctctagtatggtagtccagtagttcagctcagtaagcacaaggaatgtcagtcagctagaaaggagtcgtgtg |
15596801 |
T |
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| Q |
212 |
cgaggcaaaagaatgaatgtgatatctagaaggtttttctcaaggctcatgataacgtttgaagtagcaagtgtagtaacatgaaattgaaatgggaaga |
311 |
Q |
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|||||||||||||||||||||||||| |||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15596802 |
cgaggcaaaagaatgaatgtgatatccagaaggcttttctcaaggctcaaggtaacgtttgaagtagcaagtgtagtaacatgaaattgaaatgggaaga |
15596901 |
T |
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| Q |
312 |
cgccactcaaataagattgacagtatccaagccttatctagatgtggaatacggacagtccaaattcggtgttcttgaaatatagaaaag |
401 |
Q |
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| T |
15596902 |
cgccactcaaataagattgacagtatccaagccttatctagatgtggaatacggacagtccaacctcggtgttcttgaaatatagaaaag |
15596991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 12 - 135
Target Start/End: Original strand, 15596386 - 15596509
Alignment:
| Q |
12 |
agagacgagtaagaaattttttaagcgccaagttcataaatgagaagactcaagtagtcgatgaagatgtagtaagagcatgatagacgtagttctacct |
111 |
Q |
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||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
15596386 |
agagacgagtaagaaatttttgaagcgccaagttcaataatgagaagactcaagtagtcgatgaagatgcagtaagagcatgatagacgtagttctacct |
15596485 |
T |
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| Q |
112 |
gactaagtcaagagagtttagaat |
135 |
Q |
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| T |
15596486 |
gagtaagtcaagagagtttagaat |
15596509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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