View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16642_high_9 (Length: 373)
Name: NF16642_high_9
Description: NF16642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16642_high_9 |
 | |
|
| [»] scaffold0006 (3 HSPs) |
| | |
|
Alignment Details
Target: scaffold0006 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 80543 - 80193
Alignment:
| Q |
1 |
cccggactcacagtcattactaacaaactaatattgaatcatgattaaaactcaaaaaatacaccctatgaatttgaacaaagcaaagatgttaaaagta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
80543 |
cccggactcacagtcattactaacaaactaatattgaatcatgattaaaactcaaaaaatacaccctatgaatttgaacaaagcaaagatgttaaaagta |
80444 |
T |
|
| Q |
101 |
gattcgaacttaaaaataatgaaacctctagaaatagtaaaactgaaacatacctccaaaatacaaagccatatgataaacgcgagttgatgggttggga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
80443 |
gattcgaacttaaaaataatgaaacctctagaaatagtaaaactgaaacatacctccaaaatacaaagccatatgataaatgcgagttgatgggttggga |
80344 |
T |
|
| Q |
201 |
tccgaatttgcttaaaact---tagcaagaatttcacataaaccacaaaaactaacttttgaaaggcttactatcttcacttcacctcttttgggaacag |
297 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
80343 |
tccgaatttgcttaaaacttagtagcaagaatttcacataaaccacaaaaactaccttttgaaaggcttactatcttcccttcacctcttttgggaacag |
80244 |
T |
|
| Q |
298 |
aacacaaaccgtgttgcaactccaatgaggccatttgaatgcaaaactgaagagcact |
355 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
80243 |
aacacaaaccg-------actccaatgaggccatttcaatgcaaagctgaagagcact |
80193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 129331 - 128971
Alignment:
| Q |
1 |
cccggactcacagtcattactaacaaactaatattgaatcatgattaaaactcaa-----------aaaatacaccctatgaatttgaacaaagcaaaga |
89 |
Q |
| |
|
|||||||||||| || ||||||| ||||||||||||| ||| ||||||||||||| ||||||||||||| |||||||||| ||||||||| |
|
|
| T |
129331 |
cccggactcacaatcgttactaataaactaatattgattcaagattaaaactcaacaaaaaaaaaaaaaatacaccctacgaatttgaactaagcaaaga |
129232 |
T |
|
| Q |
90 |
tgttaaaagtagattcgaacttaaaaataatgaaacctctagaaatagtaaaactgaaacatacctccaaaatacaaagcc-atatgataaacgcgagtt |
188 |
Q |
| |
|
||||||| || ||| |||| |||||||||| | |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
129231 |
tgttaaatttacatttgaacataaaaataatcgcaactctagaaatagaaaaactgaaacatacctccaaaatacaaagccaatatgataaacgcgagct |
129132 |
T |
|
| Q |
189 |
gatgggttgggatccgaatttgcttaaaacttag---caagaatttcacataaaccacaaaaactaacttttgaaaggcttactatcttcacttcacctc |
285 |
Q |
| |
|
|||||||| ||||||||||||||||| || |||| ||| |||||||||| |||||| ||||||||||||| ||||||| ||||||||||| |
|
|
| T |
129131 |
gatgggttaggatccgaatttgcttacaagttagtaacaacaatttcacat---------aaactaccttttgaaaggctcactatctgcacttcacctc |
129041 |
T |
|
| Q |
286 |
ttttgggaacagaacacaaaccgtgttgcaactccaatgaggccatttgaatgcaaaactgaagagcact |
355 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||| ||||||| |||||||| |||||||||||| |
|
|
| T |
129040 |
ttttggaaacagaacacaaactgtgttgcaactccaatgatgccatttcaatgcaaagctgaagagcact |
128971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 215627 - 215328
Alignment:
| Q |
1 |
cccggactcacagtcattactaacaaactaatattgaatcatgattaaaactcaa-------aaaatacaccctatgaatttgaacaaagcaaagatgtt |
93 |
Q |
| |
|
|||||||||||| || ||||||| ||| ||||||||| | | |||||||||||| ||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
215627 |
cccggactcacattcgttactaataaattaatattgatttaaaattaaaactcaacaaaataaaaatacaccctacgaatttgaactaagcaaagatgtt |
215528 |
T |
|
| Q |
94 |
aaaagtagattcgaacttaaaaataatgaaacctctagaaatagtaaaactgaaacatacctccaaaatacaaagcc-atatgataaacgcgagttgatg |
192 |
Q |
| |
|
||| || ||| |||| |||||||||| | |||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
215527 |
aaatttacatttgaacataaaaataatcgcaactctagaaatagaaaaactgaaa-atacctccaaaatacaaagccaatatgataaacgcgagctgatg |
215429 |
T |
|
| Q |
193 |
ggttgggatccgaatttgcttaaaacttag---caagaatttcacataaaccacaaaaactaacttttgaaaggcttactatcttcacttcacctctttt |
289 |
Q |
| |
|
|||| ||||||||||||||||| ||||||| ||| |||||||||| |||||| |||||||||||||||||| || ||||||||||||||| |
|
|
| T |
215428 |
ggttaggatccgaatttgcttacaacttagtaacaacaatttcacat---------aaactaccttttgaaaggcttactacctgcacttcacctctttt |
215338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 128; Significance: 4e-66; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 44 - 239
Target Start/End: Original strand, 19154863 - 19155063
Alignment:
| Q |
44 |
attaaaactca--aaaaatacaccctatgaatttgaacaaagcaaagatgttaaaagtagattcgaacttaaaaataatgaaacctctagaaatagtaaa |
141 |
Q |
| |
|
||||||||||| |||||||||||| | ||| ||||||||||||||||||||||| || |||||||| |||||||||||||||||||| |||||| ||| |
|
|
| T |
19154863 |
attaaaactcataaaaaatacacccaacgaaattgaacaaagcaaagatgttaaatttacattcgaacataaaaataatgaaacctctataaatagaaaa |
19154962 |
T |
|
| Q |
142 |
actgaaacatacctccaaaatacaaagccatatgataaacgcgagttgatgggttgggatccgaatttgcttaaaacttag---caagaatttcacataa |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
19154963 |
actgaaacatacctccaaaatacaaagccatatgataaacgcgagttgatgggttagaatccgaatttgcttaaaacttagtaacaagaatttcacgtaa |
19155062 |
T |
|
| Q |
239 |
a |
239 |
Q |
| |
|
| |
|
|
| T |
19155063 |
a |
19155063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 13600674 - 13600460
Alignment:
| Q |
1 |
cccggactcacagtcattactaacaaactaatattgaatcatgattaaaactcaa-----------aaaatacaccctatgaatttgaacaaagcaaaga |
89 |
Q |
| |
|
|||||||||||| || ||||||| ||||||||||||| ||| ||||||||||||| ||||||||||||| |||||||||| ||||||||| |
|
|
| T |
13600674 |
cccggactcacaatcgttactaataaactaatattgattcaagattaaaactcaacaaaaaaaaaaaaaatacaccctacgaatttgaactaagcaaaga |
13600575 |
T |
|
| Q |
90 |
tgttaaaagtagattcgaacttaaaaataatgaaacctctagaaatagtaaaactgaaacatacctccaaaatacaaagcc-atatgataaacgcgagtt |
188 |
Q |
| |
|
||||||| || ||| |||| |||||||||| | |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
13600574 |
tgttaaatttacatttgaacataaaaataatcgcaactctagaaatagaaaaactgaaacatacctccaaaatacaaagccaatatgataaacgcgagct |
13600475 |
T |
|
| Q |
189 |
gatgggttgggatcc |
203 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
13600474 |
gatgggttaggatcc |
13600460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 13484120 - 13483827
Alignment:
| Q |
1 |
cccggactcacagtcattactaacaaactaatattgaatcatgattaaaactc--aaaaaatacaccctatgaatttgaacaaagcaaagatgttaaaag |
98 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||||| ||||||||||| |||||||||| |||| ||| ||||||||||||||||||||||| |
|
|
| T |
13484120 |
cccggactcacaatcattactaacaaactaatcttgaatcaagattaaaactcataaaaaatacatcctacgaaattgaacaaagcaaagatgttaaatt |
13484021 |
T |
|
| Q |
99 |
tagattcgaac-ttaaaaataatgaaacctct---agaaatagtaaaactgaaacatacctccaaaatacaaagccatatgataaacgcgagttgatggg |
194 |
Q |
| |
|
|| ||| ||| ||||| |||||| | || | ||| | |||||| |||||||||||| ||||||||||| |||| |||||||||||||||| |
|
|
| T |
13484020 |
tacattgaaacaataaaactaatgacaactttcaacaaaaaaaaaaaacttaaacatacctccgttatacaaagccagatgacaaacgcgagttgatggt |
13483921 |
T |
|
| Q |
195 |
ttgggatccgaatttgcttaaaac---ttagcaagaattt-cacataaaccacaaaaactaacttttgaaaggcttactatcttcacttcacct |
284 |
Q |
| |
|
||||||||| |||||||||| || ||| ||| ||||| ||| ||| ||||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
13483920 |
ttgggatccaaatttgcttacgacttattaacaacaatttgcacgtaatccacaaaaactgccttttgaaaggcttactatcttcaattcacct |
13483827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 280 - 355
Target Start/End: Complemental strand, 13480373 - 13480298
Alignment:
| Q |
280 |
cacctcttttgggaacagaacacaaaccgtgttgcaactccaatgaggccatttgaatgcaaaactgaagagcact |
355 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||||||| ||||||| ||||| || |||||||||||| |
|
|
| T |
13480373 |
cacctcttttgggaacagaacactaactgtgttgcaactccaatgatgccatttcaatgcgaagctgaagagcact |
13480298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 16756897 - 16756951
Alignment:
| Q |
70 |
gaatttgaacaaagcaaagatgttaaaagtagattcgaacttaaaaataatgaaa |
124 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||| |||||||||||||| |
|
|
| T |
16756897 |
gaatttgaacaaagcaaagatgttaaatttacattcgaacataaaaataatgaaa |
16756951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 13530524 - 13530566
Alignment:
| Q |
54 |
aaaaaatacaccctatgaatttgaacaaagcaaagatgttaaa |
96 |
Q |
| |
|
||||| ||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
13530524 |
aaaaagtacaccccatgaaattgaacaaagcaaagatgttaaa |
13530566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 13446862 - 13446898
Alignment:
| Q |
60 |
tacaccctatgaatttgaacaaagcaaagatgttaaa |
96 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
13446862 |
tacaccccatgaaattgaacaaagcaaagatgttaaa |
13446898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 13627800 - 13627836
Alignment:
| Q |
60 |
tacaccctatgaatttgaacaaagcaaagatgttaaa |
96 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
13627800 |
tacaccccatgaaattgaacaaagcaaagatgttaaa |
13627836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 264 - 351
Target Start/End: Original strand, 22267322 - 22267409
Alignment:
| Q |
264 |
cttactatcttcacttcacctcttttgggaacagaacacaaaccgtgttgcaactccaatgaggccatttgaatgcaaaactgaagag |
351 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||| |||||||| ||||||| |
|
|
| T |
22267322 |
cttaccatcttcacttcacctcttttgggaatagaacacaaactgtgttgcaactccaatgatgccatttcaatgcaaagttgaagag |
22267409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University