View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16642_low_10 (Length: 402)
Name: NF16642_low_10
Description: NF16642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16642_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 10 - 384
Target Start/End: Complemental strand, 47636285 - 47635911
Alignment:
| Q |
10 |
aagaatatagtcgaggcttttgttggccacaaattcataaacaagtatcttttcttctctttccaagcaaaatcctagaagcctagctaaatttctatgt |
109 |
Q |
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| T |
47636285 |
aagaatatagtcgaggcttttgttggccacaaattcataaacaagtatcttttcttctctttccaagcaaaatcctagaagcctagctaaatttctatgt |
47636186 |
T |
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| Q |
110 |
tgaagttgggcaacaagctcaacttcattcttaaattgttctccgccctgtcccgagtgtttagagagtctcttgacagctatttcttgtccgctcggaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47636185 |
tgaagttgggcaacaagctcaacttcattcttaaattgttctccgccctgtcccgagtgtttagagagtctcttgacagctatttcttgtccgctcggaa |
47636086 |
T |
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| Q |
210 |
gtgagccctgaattttcacaaaaattacatggtatatataacaattggtataatttccatgttatgaagaaacaaaagcatgttaacttcataccttgta |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
47636085 |
gtgagccctgaattttcacaaaaattacatggtatatataacaattggtataatttccatgctatgaagaaacaaaagtatgttaacttcataccttgta |
47635986 |
T |
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| Q |
310 |
aacctcaccaaatccaccttcacctagcttattagcttctgagaatttgtttgtagcttcttcaagtgtactcaa |
384 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47635985 |
aacctcaccaaatccaccttcacctagcttattagcttctgagaatttgtttgtagcttcttcaagtgtactcaa |
47635911 |
T |
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