View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16642_low_12 (Length: 364)
Name: NF16642_low_12
Description: NF16642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16642_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 14 - 351
Target Start/End: Original strand, 36330861 - 36331201
Alignment:
| Q |
14 |
aattatattggcttatttgactttatcgtagtttatacatatgatcgattaatgataattacttaacgaaactatttctatccaaacagagcgttaaaag |
113 |
Q |
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| T |
36330861 |
aattatattggcttatttgactttatcgtagtttatacatatgatcgattaatgataattacttaaggaaactatttctatccaaacagagcgttaaaag |
36330960 |
T |
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| Q |
114 |
gaaaagctaccttgaaatgacaaggaatgcgatcctttacggaaacagggtcgtagcgcttattcttcatagactcttcctctgcatcttgttcctcgta |
213 |
Q |
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| T |
36330961 |
gaaaagctaccttgaaatgagaaggaatgcgatcctttacggaaacagggtcgtagcgcttattcttcatagactcttcctctgcatcttgttcctcgta |
36331060 |
T |
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| Q |
214 |
ttcata---aacatcagtggtggcttcatcgaaatggacattggtttgaatctgtttgttcaaagatgaaggcaaacgaggattggttttcgacttttta |
310 |
Q |
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| T |
36331061 |
ttcataaacaacatcagtggtggcttcatcgaaatggacattggtttgaatctgtttgttcaaagatgaaggcgaacgaggattggttttcgacttttta |
36331160 |
T |
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| Q |
311 |
cttcggaggttggtgccgttcatctgttttcgtttcttttc |
351 |
Q |
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| T |
36331161 |
cttcggaggttggtgtcgttcatctgttttcgtttcttttc |
36331201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 44371826 - 44371862
Alignment:
| Q |
256 |
ttgaatctgtttgttcaaagatgaaggcaaacgagga |
292 |
Q |
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| T |
44371826 |
ttgaatctcttttttcaaagatgaaggcaaacgagga |
44371862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 44380681 - 44380717
Alignment:
| Q |
256 |
ttgaatctgtttgttcaaagatgaaggcaaacgagga |
292 |
Q |
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| T |
44380681 |
ttgaatctcttttttcaaagatgaaggcaaacgagga |
44380717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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