View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16642_low_13 (Length: 333)
Name: NF16642_low_13
Description: NF16642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16642_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 2272781 - 2272469
Alignment:
| Q |
1 |
ccaattgaaaagctagacaattcaaattaataaactgatatgaacatcaacatatattcactttgtcttggacacgaacattaagtctgtccttaaacat |
100 |
Q |
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| T |
2272781 |
ccaattgaaaagctagacaattcaaattaataaactgatatgaacatcaacatatattcactttgtcttggacacgaacattaagtctgtccttaagcat |
2272682 |
T |
|
| Q |
101 |
tattcattcttctgctatttatgaaaaagaatggtaaaattagacaccgagccaaatctcgtaaattattctacattcctagagcgaggataaagatgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272681 |
tattcattcttctgctatttatgaaaaagaatggtaaaattagacaccgagccaaatctcgtaaattattctacattcctagagcgaggataaagatgaa |
2272582 |
T |
|
| Q |
201 |
tcaatttccaccgtcaattcaataattataaactagtcagatgaattaaacagatagattcctcttggatttgtgtgaatccttgagcaaaactttctga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272581 |
tcaatttccaccgtcaattcaataattataaactagtcagatgaattaaacagatagattcctcttggatttgtgtgaatccttgagcaaaactttctga |
2272482 |
T |
|
| Q |
301 |
tggatcatgaatc |
313 |
Q |
| |
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||||||||||||| |
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| T |
2272481 |
tggatcatgaatc |
2272469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 250
Target Start/End: Original strand, 40772478 - 40772552
Alignment:
| Q |
176 |
ttcctagagcgaggataaagatgaatcaatttccaccgtcaattcaataattataaactagtcagatgaattaaa |
250 |
Q |
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|||||| |||||| ||||||| ||||||||||||| ||||||||||||| | ||||||||||||||| |||||| |
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| T |
40772478 |
ttcctaaagcgagaataaagaggaatcaatttccattgtcaattcaataactgtaaactagtcagatggattaaa |
40772552 |
T |
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