View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16642_low_18 (Length: 301)
Name: NF16642_low_18
Description: NF16642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16642_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 7 - 290
Target Start/End: Original strand, 51877707 - 51877986
Alignment:
| Q |
7 |
tcgaacaatatattgaataacattatcttttacaagacctaattttgtacgatatacaattttatatatgaaaatgctaatgagttttctaattgcactc |
106 |
Q |
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|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| | || |
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| T |
51877707 |
tcgaccaatatattgaataacattatcttttacaagatctaattttgtacgatatacaattttatatatggaaatgctaacgagttttctaattgtaatc |
51877806 |
T |
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| Q |
107 |
cataaggactttatatagtaagtttggtcaatataaacatgcagtccgtattcaagttgatttcttgaaatatgaccagagatcatatatataggaagaa |
206 |
Q |
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| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
51877807 |
cttaagaactttatatagtaagtttggtcaatataaacatgcagtccgtattcaagttgatttcttgaaatatgcccagagatc----atataggaagaa |
51877902 |
T |
|
| Q |
207 |
aagaaacttattaaagaatggtcattagtctaaatgtttttctaatttggtgaatgcgtatattccactccacatattgtttct |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
51877903 |
aagaaacttattaaagaatggtcattagtctaaatgtttttctaatttggtgaatgcgtatattccactctacatattgtttct |
51877986 |
T |
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