View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16642_low_19 (Length: 300)
Name: NF16642_low_19
Description: NF16642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16642_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 16 - 280
Target Start/End: Original strand, 54714171 - 54714434
Alignment:
| Q |
16 |
atgaaccctattttattccatgcaaaacaataacgataggaagaaaataaaaatacttgagtgataatgtacactatggcaaaaacttcaattcttctag |
115 |
Q |
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| T |
54714171 |
atgaagcctattttattccatgcaaaacaataacgataggaagaaaataaaaatact-gagtgatattgtacactatggcaaaaacttcaattcttctag |
54714269 |
T |
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| Q |
116 |
ttgtccttgctgtggcattatttctcaatggctatagtgctgctgctgaaggtgaaggaagagctaatcaactggtgaaagatgaagctggtattctgaa |
215 |
Q |
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| T |
54714270 |
ttgtccttgctgtggcattatttctcaatggctatagtgctgctgctgaaggtgaaggaagagctaatcaactggtgaaagatgaagctggtattctgaa |
54714369 |
T |
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| Q |
216 |
taatgctgctgctgggggtgatggaagagttaatcaaccggtgaaagatattgaagctgatcagc |
280 |
Q |
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| T |
54714370 |
tagtgctgctgccgggggtgatggaagagttaatcaaccggtgaaagatattgaagctgatcagc |
54714434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 252
Target Start/End: Original strand, 54721091 - 54721335
Alignment:
| Q |
16 |
atgaaccctattttattccatgcaaaacaataacgataggaagaaaataaaaatacttgagtgataatgtacactatggcaaaaac---------ttcaa |
106 |
Q |
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| T |
54721091 |
atgaagcctattttattccatgcaaaacaataacgataggaaggaaataaagttact-gatagatattgtacactatggcaaaaaccagtactgtttcac |
54721189 |
T |
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| Q |
107 |
ttcttctagttgtccttgctgtggcattatttctcaatggctatagtgctgctgctgaaggtgaaggaagagctaatcaactggtgaaagatgaagctgg |
206 |
Q |
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| T |
54721190 |
ttgttctacttgtccttgctgtggcattaattctgaatggctatagtgcttctgctgagggtgaagtaagagctaatcaactggtgaaagatgaagttgg |
54721289 |
T |
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| Q |
207 |
tattctgaataatgctgctgctgggggtgatggaagagttaatcaa |
252 |
Q |
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| T |
54721290 |
tactctgaatagtgctgctgctgagggtgatggaagagttaatcaa |
54721335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 205
Target Start/End: Original strand, 54721298 - 54721357
Alignment:
| Q |
149 |
atagtgctgctgctgaaggtgaaggaagagctaatcaa---ctggtgaaagatgaagctg |
205 |
Q |
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| T |
54721298 |
atagtgctgctgctgagggtgatggaagagttaatcaattactagtgaaagatgaagctg |
54721357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 110 - 252
Target Start/End: Original strand, 5297346 - 5297488
Alignment:
| Q |
110 |
ttctagttgtccttgctgtggcattatttctcaatggctatagtgctgctgctgaaggtgaaggaagagctaatcaactggtgaaagatgaagctggtat |
209 |
Q |
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| T |
5297346 |
ttctagttgtccttgctgtggcattaattctgaatggctatagtgcttctgctgagggtgaagtaagagctaatcaactggtgaaagatgaatctggtac |
5297445 |
T |
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| Q |
210 |
tctgaataatgctgctgctgggggtgatggaagagttaatcaa |
252 |
Q |
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| T |
5297446 |
tctgaatagtgctgctgctgagggtgatggaagagttaatcaa |
5297488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 116 - 204
Target Start/End: Original strand, 5302783 - 5302868
Alignment:
| Q |
116 |
ttgtccttgctgtggcattatttctcaatggctatagtgctgctgctgaaggtgaaggaagagctaatcaactggtgaaagatgaagct |
204 |
Q |
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| T |
5302783 |
ttgtccttgttgtggcattatttgtgaatggctatagtgctgctg-tg--ggtgtgggaagagataatcaactggagaaagatgaagct |
5302868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 205
Target Start/End: Original strand, 5297451 - 5297510
Alignment:
| Q |
149 |
atagtgctgctgctgaaggtgaaggaagagctaatcaa---ctggtgaaagatgaagctg |
205 |
Q |
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|||||||||||||||| ||||| ||||||| ||||||| || |||||||||||||||| |
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| T |
5297451 |
atagtgctgctgctgagggtgatggaagagttaatcaattactagtgaaagatgaagctg |
5297510 |
T |
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