View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16642_low_28 (Length: 233)
Name: NF16642_low_28
Description: NF16642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16642_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 3133356 - 3133570
Alignment:
| Q |
1 |
aaagtggtgtatcagaaaatctaatgtgtaatgtaaactatgaaaatattcaggttctggctacagcaaaagataataagatatagcgaatgagaaaata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3133356 |
aaagtggtgtatcagaaaatctaatgtgtaatgtaaactatgaaaatattcaggttctggctacagcaaaagataataagatatagcgaatgagaaaata |
3133455 |
T |
|
| Q |
101 |
tcaaattgatatataatttcaccgtagttgttcgaggccgaaaatgggagaaatctcttaacgcatccagtggaactcgtttctttgataatggatactt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3133456 |
tcaaattgatatataatttcaccgtagttgttcgaggccgaaaatgggagaaatctcttaacgcatccagtggaactcgtttctttgataatggatactt |
3133555 |
T |
|
| Q |
201 |
gccaatagctactgt |
215 |
Q |
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||||||| ||||||| |
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| T |
3133556 |
gccaatatctactgt |
3133570 |
T |
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