View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16642_low_29 (Length: 226)
Name: NF16642_low_29
Description: NF16642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16642_low_29 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 46266477 - 46266262
Alignment:
| Q |
1 |
tccggtgtctgacacatgttagtgtcggccaatgtgattatctataacaatgtgtcaatgacgtgtttgatgtccatgcatgtgtaagtgcttcatatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46266477 |
tccggtgtctgacacatgttagtgtcggccaatgtgattatctataacaatgtgtcaatgacgtgtttgatgtccatgcatgtgtaagtgcttcatatgt |
46266378 |
T |
|
| Q |
101 |
tatgtgtctattttgcagggaaataatggtggtccccctcctaatccccaatctggaccaccagagcatcagaattctcgtggttccaacaacaatgcgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46266377 |
tatgtgtctattttgcagggaaataatggtggtccccctcctaatccccaatctggaccaccagagcatcagaattctcgtggttccaacaacaatgcgg |
46266278 |
T |
|
| Q |
201 |
taattcttttcctttg |
216 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
46266277 |
taattcttttcctttg |
46266262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University