View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16642_low_30 (Length: 217)
Name: NF16642_low_30
Description: NF16642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16642_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 47942022 - 47942223
Alignment:
| Q |
1 |
tgcatttgaagtaacttttgtgcttgaactttgggattcaagaagaaaagcaggtatcctctacacaatttgttaggttaagatacacaattcattagtt |
100 |
Q |
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| T |
47942022 |
tgcatttgaagtaacttttgtgcttgaactttgggatccaagaagaaaagcaggtatcctctacacaatttgttaggttaagatacacaattcattagtt |
47942121 |
T |
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| Q |
101 |
tgataacgaggagaggaatcaaagttgaaatgaaaattacaggtagtagtaattaataacgtaccttaatagtgtgattttttaaggcaggatggtcaaa |
200 |
Q |
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| T |
47942122 |
tgataacgatgagaggaatcaaagttgaaatgaaaattacaggtagtagtaattaataacgtaccttaatagtgtgattttttaaggcaggatggtcaaa |
47942221 |
T |
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| Q |
201 |
ag |
202 |
Q |
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|| |
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| T |
47942222 |
ag |
47942223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 47910698 - 47910769
Alignment:
| Q |
5 |
tttgaagtaacttttgtgcttgaactttgggattcaagaagaaaagcaggtatcctctacacaatttgttag |
76 |
Q |
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| T |
47910698 |
tttgaagtaactccagtgcttgaactttgggattcaagaagaaaatcgggtaccatctgcacaatttgttag |
47910769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 47930731 - 47930781
Alignment:
| Q |
144 |
tagtagtaattaataacgtaccttaatagtgtgattttttaaggcaggatg |
194 |
Q |
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| T |
47930731 |
tagtagtaattaataacgcacctgaataatgtgattttttaaagcaggatg |
47930781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 47929671 - 47929726
Alignment:
| Q |
21 |
tgcttgaactttgggattcaagaagaaaagcaggtatcctctacacaatttgttag |
76 |
Q |
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| T |
47929671 |
tgcttgaactttgtgattcaagaagaaaatcgggtatcctctgcagagtttgttag |
47929726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 47913420 - 47913468
Alignment:
| Q |
146 |
gtagtaattaataacgtaccttaatagtgtgattttttaaggcaggatg |
194 |
Q |
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| T |
47913420 |
gtagtaattaataacgcacccgaatactgtgattctttaaggcaggatg |
47913468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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