View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16642_low_32 (Length: 202)
Name: NF16642_low_32
Description: NF16642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16642_low_32 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 16 - 187
Target Start/End: Original strand, 2484104 - 2484275
Alignment:
| Q |
16 |
acaatcgagcaaaccaatatttttcttgtaatttatccttattttagtagatcacaaaaaatttcgcacctttcggagaagttaagaaattcacatccct |
115 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2484104 |
acaatcgatcaaaccaatatttttcttgtaatttatccttattttagtagctcacaaaaaattccgcacctttcggagaagttaagaaattcacatccct |
2484203 |
T |
|
| Q |
116 |
ctttgacgtaatcatttgaagcaaaaagagaatcatagttgatctctattagttggttgatcaacaagatag |
187 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2484204 |
ctttgacgtaatcttttgaagcaaaaagagaatcatagttgatctctattagttagttgatcaacaagatag |
2484275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University