View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16642_low_33 (Length: 201)
Name: NF16642_low_33
Description: NF16642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16642_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 5e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 36330333 - 36330521
Alignment:
| Q |
1 |
gctcctatagttgaaaaccctatatctactttttcataaaaggatatagtcgttgcatctctgtttgtctgaataaaaggctgatactttgtgacatgct |
100 |
Q |
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| T |
36330333 |
gctcctatagttgaaaaccctatatctactttttcataaaaggatatagtcgttgcatctctgtttgtctgaataaaaggctgatactttgtgacatact |
36330432 |
T |
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| Q |
101 |
tttttgatataacatatgctaccttcctttctaccttggcttgatcagcctctggaagtggtgtatgcatagttctagcattcttctca |
189 |
Q |
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| T |
36330433 |
tttttgatataacatatgctaccttcctttctaccttggcttgatcagcctctggaagtggtgtatgcatagttctaccattcttctca |
36330521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 121 - 178
Target Start/End: Original strand, 44369556 - 44369613
Alignment:
| Q |
121 |
accttcctttctaccttggcttgatcagcctctggaagtggtgtatgcatagttctag |
178 |
Q |
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| T |
44369556 |
accttcctttccaccttcgcttgatctgcctttggaagtggtgcatgaacagttctag |
44369613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 178
Target Start/End: Original strand, 52929589 - 52929678
Alignment:
| Q |
89 |
ttgtgacatgcttttttgatataacatatgctaccttcctttctaccttggcttgatcagcctctggaagtggtgtatgcatagttctag |
178 |
Q |
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| T |
52929589 |
ttgtgacttgtttctttgatatttcatacgccaccttcctttctacctttgcttgatctgcctttggaagtggtgcatgaacagttctag |
52929678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 121 - 178
Target Start/End: Complemental strand, 20237921 - 20237864
Alignment:
| Q |
121 |
accttcctttctaccttggcttgatcagcctctggaagtggtgtatgcatagttctag |
178 |
Q |
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| T |
20237921 |
accttcctttccaccttcgcttgatctgcctttggaagtggtgcatgaacagttctag |
20237864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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