View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16642_low_4 (Length: 522)
Name: NF16642_low_4
Description: NF16642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16642_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 460; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 20 - 507
Target Start/End: Original strand, 14433270 - 14433757
Alignment:
| Q |
20 |
aagtcatgaatcaatttccctttagctgcagagttcaccactggtacacgaagggttccatcagggttgtttggggaggtcaccacctctatgtaagatt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
14433270 |
aagtcatgaatcaatttccctttagctgcagagttcaccactggtacacgaagggttccatcagggttgtttggggaagtcaccacctctatgtaagatt |
14433369 |
T |
|
| Q |
120 |
catttttatcatacacagcaacatcaccaccccattgaaacatccttgaatgcaatatattaattgcatttttgtattcctacaaaataaaattaaacac |
219 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
14433370 |
catttttatcatacacagcagcatcaccaccccattgaaacatccttgaatgcaatatattaattgcatttttgtattcctacaaaataaaattaaacgc |
14433469 |
T |
|
| Q |
220 |
attgttagttaaccttccttgcatggtcggcccaataaattttatttgtagatgagacctaaaacatattttaatatacgagacatttttagtctgtata |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14433470 |
attgttagttaaccttccttgcatggtcggcccagtaaattttatttgtaggtgagacctaaaacatattttaatatacgagacatttttagtctgtata |
14433569 |
T |
|
| Q |
320 |
cgagaccattttgtttataagaaagaaagatcaccgagtaataaggagtaggagaaacaacattgatagggtgatcagggacatctaaaggagacaaagc |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14433570 |
cgagaccattttgtttataagaaagaaagatcaccgagtaataaggagtaggagaaataacattgatagggtgatcagggacatctaaaggagacaaagc |
14433669 |
T |
|
| Q |
420 |
aaacaaagcagcttggaagagttgagaagagccatttccaacaactatgtatttatctttggtcacagcatttccaactaaatgatga |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14433670 |
gaacaaagcagcttggaagagttgagaagagccatttccaacaactatgtatttatctttggtcacagcatttccaactaaatgatga |
14433757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 50 - 210
Target Start/End: Original strand, 14441631 - 14441791
Alignment:
| Q |
50 |
gagttcaccactggtacacgaagggttccatcagggttgtttggggaggtcaccacctctatgtaagattcatttttatcatacacagcaacatcaccac |
149 |
Q |
| |
|
||||||||||||||| ||||| || |||||||||||||||||||||||||| ||||||||||||| || |||| |||||||| |||| ||||||||| |
|
|
| T |
14441631 |
gagttcaccactggtgttcgaagagtcccatcagggttgtttggggaggtcactacctctatgtaaggtttgttttcatcatacaaagcagcatcaccac |
14441730 |
T |
|
| Q |
150 |
cccattgaaacatccttgaatgcaatat-attaattgcatttttgtattcctacaaaataaa |
210 |
Q |
| |
|
|||||||||| | |||||| |||| ||| || ||| ||| || |||||||||||||||||| |
|
|
| T |
14441731 |
cccattgaaatagccttgattgca-tatgatcaatcacatcttggtattcctacaaaataaa |
14441791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 344 - 497
Target Start/End: Original strand, 14443011 - 14443164
Alignment:
| Q |
344 |
gaaagatcaccgagtaataaggagtaggagaaacaacattgatagggtgatcagggacatctaaaggagacaaagcaaacaaagcagcttggaagagttg |
443 |
Q |
| |
|
||||||| |||||||||||||||| || || ||||||||||||||| ||||||| | |||| ||||||| | ||| ||||| ||| | ||| ||||| |
|
|
| T |
14443011 |
gaaagattaccgagtaataaggagcagcagcaacaacattgataggttgatcagagggatctgaaggagagagtgcatacaaaagagcattgaaaagttg |
14443110 |
T |
|
| Q |
444 |
agaagagccatttccaacaactatgtatttatctttggtcacagcatttccaac |
497 |
Q |
| |
|
|| |||||||||||| | |||||| | |||||||| || ||| |||| ||||| |
|
|
| T |
14443111 |
agtagagccatttcctaacactatgaacttatcttttgtgacaacattaccaac |
14443164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 251 - 319
Target Start/End: Original strand, 20626818 - 20626885
Alignment:
| Q |
251 |
ccaataaattttatttgtagatgagacctaaaacatattttaatatacgagacatttttagtctgtata |
319 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||| ||||||| ||| ||| | ||||||||||||||| |
|
|
| T |
20626818 |
ccaataaattttatttgtagacgagctttaaaacaaattttaa-atatgaggcttttttagtctgtata |
20626885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 251 - 339
Target Start/End: Original strand, 32598355 - 32598443
Alignment:
| Q |
251 |
ccaataaattttatttgtagatgagacctaaaacatattttaatatacgagacatttttagtctgtatacgagaccattttgtttataa |
339 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||| ||||||||||| ||| |||||||||||| |||| || || |||||||||||| |
|
|
| T |
32598355 |
ccaataaattttatttgtagaagaggtctaaaacaaattttaatatatgaggcatttttagtctatatatgaagcctttttgtttataa |
32598443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 247 - 297
Target Start/End: Complemental strand, 23099366 - 23099316
Alignment:
| Q |
247 |
cggcccaataaattttatttgtagatgagacctaaaacatattttaatata |
297 |
Q |
| |
|
||||||||||||||||||| ||| ||| | ||||||||| ||||||||||| |
|
|
| T |
23099366 |
cggcccaataaattttattcgtatatgtgtcctaaaacaaattttaatata |
23099316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 295
Target Start/End: Complemental strand, 21090503 - 21090454
Alignment:
| Q |
246 |
tcggcccaataaattttatttgtagatgagacctaaaacatattttaata |
295 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||| || ||||||||| |
|
|
| T |
21090503 |
tcggcccaataatttttatttgtagatgaggtctaaatcaaattttaata |
21090454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University