View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16642_low_5 (Length: 481)
Name: NF16642_low_5
Description: NF16642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16642_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 470
Target Start/End: Original strand, 37069016 - 37069478
Alignment:
| Q |
1 |
ctaaaaccgaattttggattatggaacacagcaggaacaactaacattggcctaaaacacaagggtgagggttaggattattaattagtatggttcttaa |
100 |
Q |
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| T |
37069016 |
ctaaaaccggatttcagattatggaacacggcaggaacaactaacaatgatctaaaacacaagggtgagggttaggattatta----gtatggttcttaa |
37069111 |
T |
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| Q |
101 |
actggctatcgaagatacaaacaagctcaatctttgtactgataaagtttgaatcatataatctaaattgtttttctttgaatttttgacataggaatca |
200 |
Q |
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| T |
37069112 |
actggctatcgaagatacaaacaagctcaatctttgtactgataaagtttgaatcatataatctaaattgtttttctttgaatttttgacataagaatca |
37069211 |
T |
|
| Q |
201 |
aaaggcaataatcaaaatacgaatcaagagacaataaactaggtcaccgatcctctactacgaatggtgttggaacccaagagagtgtattactcagaag |
300 |
Q |
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| T |
37069212 |
agagacaataatcaaaatatgaatcaagagacaataaactaggtcaccgatcctctactacgaatggtgttggaacccaagagagtgtattactcggaag |
37069311 |
T |
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| Q |
301 |
tgaaggctcggctttggtggagttggtttttgagtctcggttttttggctattcctcctgtcataaaattggaatttaggcatggnnnnnnngcttcctt |
400 |
Q |
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| T |
37069312 |
tgaaggctcggctttggtggggttggtgtttgagtctcggttttttggctattcctcctgtcataaaattggaatttaggcatggtttttttgcttcctt |
37069411 |
T |
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| Q |
401 |
tcataggttttttcctgcttatttatgtattgcttgcggccttggtagtagtttgggcttgtctgtgctc |
470 |
Q |
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| T |
37069412 |
tcataggttttttcctgcttatttatgtattgcttgcggccttg---gtagtttgggcttgtctgtgctc |
37069478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 252 - 350
Target Start/End: Original strand, 50143587 - 50143686
Alignment:
| Q |
252 |
cctctactacgaatggtgttggaacccaagagagtgtattactcagaagtgaaggctcggctttggtggagttggtttttgagtctcgg-ttttttggct |
350 |
Q |
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||||| |||||| ||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||| | |||||||| ||||||| |||||||||| |
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| T |
50143587 |
cctcttctacgagtggtgttggaacccaagagagtgtattactcggaagtgaagactcggttttggtggggaaggtttttgggtctcggcttttttggct |
50143686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 163
Target Start/End: Original strand, 49277431 - 49277556
Alignment:
| Q |
34 |
ggaacaactaacattggcctaaaacacaagggtgagggttaggattattaattagtatggttcttaaactggctatcgaagatacaaacaagctcaatct |
133 |
Q |
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| T |
49277431 |
ggaacaactaacagtgacctaaaacacaaggatgagggttatga----tgattattatggtccttaaaccggttaaccatattacaaacatgctcaatat |
49277526 |
T |
|
| Q |
134 |
ttgtactgataaagtttgaatcatataatc |
163 |
Q |
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| T |
49277527 |
ttatactgatacggtttgaattatataatc |
49277556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 99 - 175
Target Start/End: Original strand, 35677160 - 35677236
Alignment:
| Q |
99 |
aaactggctatcgaagatacaaacaagctcaatctttgtactgataaagtttgaatcatataatctaaattgttttt |
175 |
Q |
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| T |
35677160 |
aaacaggctatccatgttacaaacatgctcaaattttgtactgatatagtttgaattatataatacaaattgttttt |
35677236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 291
Target Start/End: Original strand, 35400877 - 35400909
Alignment:
| Q |
259 |
tacgaatggtgttggaacccaagagagtgtatt |
291 |
Q |
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| T |
35400877 |
tacgaatggtgttggaacccaagggagtgtatt |
35400909 |
T |
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