View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16643_high_3 (Length: 331)
Name: NF16643_high_3
Description: NF16643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16643_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 56 - 317
Target Start/End: Complemental strand, 4013565 - 4013303
Alignment:
| Q |
56 |
tccaatataagcatgctcctataaaatccagagagtaggaaacaaaacacaagctatagagtatagacagcacctagcagccgcaacaacaacataacag |
155 |
Q |
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| T |
4013565 |
tccaatataagcatgctcctataaaatccagagagtaggaaacaaaacacaagctatagagtatagacaacacctagcagccgcaacaacaacataacag |
4013466 |
T |
|
| Q |
156 |
tcccaaaaatctattgtcaactctccatcttcatagcttttatactaaatcatcaataattgactccgaactaataaatacacttatcaaaatgatataa |
255 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4013465 |
tcccaaaaatctattgtcaactctccatcttcatagcgtttatactaaatcatcaataattgactccgaactaataaatgcacttatcaaaatgatataa |
4013366 |
T |
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| Q |
256 |
tgtgttaaa-actcttaatgaagtgcatttcaatttcaaaatcgactctttatctgttttggt |
317 |
Q |
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||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4013365 |
tgtgttaaagactcttaatgaagtgcatttcaattccaaaatcgactctttatctgttttggt |
4013303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 56 - 317
Target Start/End: Complemental strand, 14835498 - 14835236
Alignment:
| Q |
56 |
tccaatataagcatgctcctataaaatccagagagtaggaaacaaaacacaagctatagagtatagacagcacctagcagccgcaacaacaacataacag |
155 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
14835498 |
tccaatatcagcatgctcctataaaatccagagagtaggaaacaaaacacaagctatagagtatagacagcacctagcagccgcaacaacaacagaacag |
14835399 |
T |
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| Q |
156 |
tcccaaaaatctattgtcaactctccatcttcatagcttttatactaaatcatcaataattgactccgaactaataaatacacttatcaaaatgatataa |
255 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||| ||||||||||| |
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| T |
14835398 |
tcccaaaaatctattgtcatctctccatcttcatagcttttatactaaatcatcaataattgactcggaactaataaatgcatttatcgaaatgatataa |
14835299 |
T |
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| Q |
256 |
tgtgttaaa-actcttaatgaagtgcatttcaatttcaaaatcgactctttatctgttttggt |
317 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
14835298 |
tgtgttaaagactcttaatgaagtgcatttcaatttcaaaatcgactctttctctgttttggt |
14835236 |
T |
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