View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16643_low_2 (Length: 516)
Name: NF16643_low_2
Description: NF16643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16643_low_2 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 1 - 516
Target Start/End: Complemental strand, 47539099 - 47538584
Alignment:
| Q |
1 |
tggtgatggattcataacgaagcaagagttgaaggaatcactaaggaacataagaatcttcatggacgagaaagagattgatgatattgttggcaagttt |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
47539099 |
tggtgatggattcataacaaagcaagagttgaaggaatcattaaggaacataagaatcttcatggatgagaaagagattgatgatattgttggcaagttt |
47539000 |
T |
|
| Q |
101 |
gattctaatggagatgagttgattgactttgatgagttttgtttgttgactagtgagtttatgggagggggtgaaggagagaaagaaggtggtgttggta |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
47538999 |
gattctaatggagatgagttgattgattttgatgagttttgtttgttgactagtgagtttatgggaggaggtgaaggagagaaagaaggtggtgttggta |
47538900 |
T |
|
| Q |
201 |
gtaaggaagatgaattggaagaattagaggctaatttaaaggaggcttttgatgtgtttgacaaagataatgatgggttgatttcagtggaggagctagc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
47538899 |
gtaaggaagatgaattggaagaattagaggctaatttaaaggaggcttttgatgtgtttgacaaagataatgatgggttaatttcagtggaggagctagc |
47538800 |
T |
|
| Q |
301 |
tttggttctttgttcgttgggattaagtgaagggaataagattgaagagtgtaaagagatgattaggaaagttgatatggatggagatggtaatgtcaat |
400 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47538799 |
tttggtactttgttctttgggattaagtgaagggaataagattgaagagtgtaaagagatgattaggaaagttgatatggatggagatggtaatgtcaat |
47538700 |
T |
|
| Q |
401 |
tttaatgagttcaagagaatgatgaagaatgggggagcaaatctctttgccacataattcatttcaacctcaaccatccttacctcactatctatgataa |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
47538699 |
tttaatgagttcaagagaatgatgaagaatgggggagcaaatctctttgccacataattcatttcaacctctaccatccttacctcactatctatgataa |
47538600 |
T |
|
| Q |
501 |
caacttatccgaccct |
516 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
47538599 |
caacttatccaaccct |
47538584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University