View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16643_low_3 (Length: 464)
Name: NF16643_low_3
Description: NF16643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16643_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 40 - 449
Target Start/End: Original strand, 44944857 - 44945264
Alignment:
| Q |
40 |
aattaaacaaattgaaaaaagaaaattgaacctggcaagcacttcattagatgaaatggaatacacgttcatcaagtcaatgtatacaacaaaatgttga |
139 |
Q |
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| T |
44944857 |
aattaaacaaattgaaaaaagaaaattgaacttggcaagcacttcattagatgaaatggaatacacgttcatcaagtcaatgtatacaacaaaatgttga |
44944956 |
T |
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| Q |
140 |
tgctttgacatttaattaaaggctactgataaacaaattcaagataaacctaaaaacaaatctgggactagatagacttttattcctcaaactatatttc |
239 |
Q |
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| T |
44944957 |
tgccttgacatttaattaaaggctactgataaacaa-ttcaagataaacctaaaaacaaatctgggactagatagacttttattcctcaaactatatttc |
44945055 |
T |
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| Q |
240 |
actcaattaatcaaaatagaaagaggagatgcagtaagacttgtaaatttgacatctgaacaaaacagctaatcctgacagataatttattctaatcctt |
339 |
Q |
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| T |
44945056 |
actcaattaatcaaaatagaaagaggagatgcagtaagacttgtaaatttgacatctgaacaaaacagctaatcctg-cagataatttattctaatcctt |
44945154 |
T |
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| Q |
340 |
tttaaaccctgcgatcggtatctggctcaaaaccttagcatcaagcactgcatactgtttcttgatctcgatcattgccttctcagccagtgcatcaacc |
439 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44945155 |
tttaaaccctgcgatcggtatctggctcaaaaccttagcatcaagcactgcatactgtttcttgatctcgatcattgccttctcagccagtgcatcaacc |
44945254 |
T |
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| Q |
440 |
tggtcttcat |
449 |
Q |
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| T |
44945255 |
tggtcttcat |
44945264 |
T |
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