View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16643_low_8 (Length: 239)
Name: NF16643_low_8
Description: NF16643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16643_low_8 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 9 - 239
Target Start/End: Original strand, 35214452 - 35214682
Alignment:
| Q |
9 |
gacatcatcagaatcggcggcaaatcgaaaaatcttagataggatggagaatctatcaacgtcaatcggagtcgtgcgagaaagtatggtggcaatacac |
108 |
Q |
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| T |
35214452 |
gacatcatcagaatcggcggcaaatcgaaaaatcttagaaaggacggagaatctaccaacgtcaatcggagtcgtgcgagaaagtatggtggcaatacac |
35214551 |
T |
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| Q |
109 |
ccttcaggcaattcatcaaaccttgtcattctttgctctttacgatgaagtttaagaatactatatgattgttgtattggagggtttatatgtttgtatg |
208 |
Q |
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| T |
35214552 |
ccttcaggcaattcatcaaaccttgtcattctttgctctttacgatgaagtttaagaatactatatgattgttgtattggagggtttatatgattgtatg |
35214651 |
T |
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| Q |
209 |
cggtagaaggctatggcgggggactgatatt |
239 |
Q |
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| T |
35214652 |
cggtagaaggctatggcgggggactgatatt |
35214682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 35207246 - 35207380
Alignment:
| Q |
9 |
gacatcatcagaatcggcggcaaatcgaaaaatcttagataggatggagaatctatcaacgtcaatcggagtcgtgcgagaaagtatggtggcaatacac |
108 |
Q |
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| T |
35207246 |
gacatcatcagaatcggcggcagatcaaaaaatcttagaaaggatggagaatctttcaacatctatcggagtcgtgcgagagagtatggtgacaatacac |
35207345 |
T |
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| Q |
109 |
ccttcaggcaattcatcaaaccttgtcattctttg |
143 |
Q |
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| T |
35207346 |
tcttcaggcaattcttcaaaacgtgtcattttttg |
35207380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 9 - 142
Target Start/End: Complemental strand, 35146096 - 35145963
Alignment:
| Q |
9 |
gacatcatcagaatcggcggcaaatcgaaaaatcttagataggatggagaatctatcaacgtcaatcggagtcgtgcgagaaagtatggtggcaatacac |
108 |
Q |
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| T |
35146096 |
gacatcatcagaatcggcggcagatcgaaaagtcttagaatggacggagaatccaccaatgtcaatcggagtcgtgcgagagtgtatggtggcgatacac |
35145997 |
T |
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| Q |
109 |
ccttcaggcaattcatcaaaccttgtcattcttt |
142 |
Q |
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| T |
35145996 |
ccttcagacaattcttcaaaacttttcattcttt |
35145963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 10 - 128
Target Start/End: Original strand, 35145845 - 35145964
Alignment:
| Q |
10 |
acatcatcagaatcggcggcaaatcgaaaaa-tcttagataggatggagaatctatcaacgtcaatcggagtcgtgcgagaaagtatggtggcaatacac |
108 |
Q |
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||||||||||||||||||||| ||||||||| ||||||| |||| | ||||||| ||||||||||| || ||||| |||| ||||||| |||||||||| |
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| T |
35145845 |
acatcatcagaatcggcggcagatcgaaaaagtcttagaaaggacgaagaatctgccaacgtcaatcagattcgtgggagagagtatggcggcaatacac |
35145944 |
T |
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| Q |
109 |
ccttcaggcaattcatcaaa |
128 |
Q |
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| T |
35145945 |
ccttcaggcaattcttcaaa |
35145964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 35249985 - 35250037
Alignment:
| Q |
76 |
ggagtcgtgcgagaaagtatggtggcaatacacccttcaggcaattcatcaaa |
128 |
Q |
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| T |
35249985 |
ggagtcgttcgagagagtatggcggcaatgcactcttccggcaattcatcaaa |
35250037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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