View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16644_high_3 (Length: 258)
Name: NF16644_high_3
Description: NF16644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16644_high_3 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 47941734 - 47941988
Alignment:
| Q |
1 |
taagaaattaaaatgatcagttgtgtgtgcacatgtataaaactaatatcaggtgtgatattttaccgagcgatttatcgttatagacgatacatcatcg |
100 |
Q |
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| T |
47941734 |
taagaaattaaaatgatcagttgtgtgtgcacatgtataaaactaatatcaggtgtgatattttaccgagcgatttatcgttatagacgatacatcatcg |
47941833 |
T |
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| Q |
101 |
ctagcactgaggttggagaaattaaggtttgtggtatttgttgaattcacataaggttccgggggtttttgtccaaatcgatcaagtgaaacagctctca |
200 |
Q |
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| T |
47941834 |
gtagcactgaggttggagaaattaaggtttgtggtatttgttgaattcacataaggttccgggggtttttgtccaaatcgatcaagtgaaacagctctca |
47941933 |
T |
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| Q |
201 |
acaagtcatccttttgaattctacgaataggtacggttccttttggacaacttcc |
255 |
Q |
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| T |
47941934 |
acaagtcatccttttgaattctacgaataggtacggttccttttggacaacttcc |
47941988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 109 - 258
Target Start/End: Original strand, 47947782 - 47947931
Alignment:
| Q |
109 |
gaggttggagaaattaaggtttgtggtatttgttgaattcacataaggttccgggggtttttgtccaaatcgatcaagtgaaacagctctcaacaagtca |
208 |
Q |
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| T |
47947782 |
gaggtttgagaaattaagttttgtgttggtggctgaattgacagatggttccggaggtttttgtccgaagcggttaagtgaaacagctcttaacaagtcc |
47947881 |
T |
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| Q |
209 |
tccttttgaattctacgaataggtacggttccttttggacaacttccact |
258 |
Q |
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| T |
47947882 |
tcctttcgaattctacgaataggtacagtttcttttggacaacttccact |
47947931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 113 - 258
Target Start/End: Original strand, 47921093 - 47921238
Alignment:
| Q |
113 |
ttggagaaattaaggtttgtggtatttgttgaattcacataaggttccgggggtttttgtccaaatcgatcaagtgaaacagctctcaacaagtcatcct |
212 |
Q |
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| T |
47921093 |
ttggagaaattaaggtttgtggggtttattgaattcacaaatacttcaggaggtttttgtccgaagcgagcaagtgaaacagctctcaacaagtcttctt |
47921192 |
T |
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| Q |
213 |
tttgaattctacgaataggtacggttccttttggacaacttccact |
258 |
Q |
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| T |
47921193 |
tccgaattcttcgaatagggacagtttcttctggacaacttccact |
47921238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 109 - 258
Target Start/End: Original strand, 47910514 - 47910663
Alignment:
| Q |
109 |
gaggttggagaaattaaggtttgtggtatttgttgaattcacataaggttccgggggtttttgtccaaatcgatcaagtgaaacagctctcaacaagtca |
208 |
Q |
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| T |
47910514 |
gaggttgtggaaattaaggtttgtgttatatgttgaattcacaaatagttccaaaggtttttgtccgaagcggtcaagtgaaacagctctcagcaagtcc |
47910613 |
T |
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| Q |
209 |
tccttttgaattctacgaataggtacggttccttttggacaacttccact |
258 |
Q |
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| T |
47910614 |
tcttttctaattcttcttattggaacagtttcttctggacaacttccact |
47910663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 258
Target Start/End: Original strand, 47929526 - 47929620
Alignment:
| Q |
164 |
ggtttttgtccaaatcgatcaagtgaaacagctctcaacaagtcatccttttgaattctacgaataggtacggttccttttggacaacttccact |
258 |
Q |
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| T |
47929526 |
ggtttttgtccgaagcggtcaagtgaaacagctctgagcaagtcctcttttcgaattcttcgtataggaacagtttcttctggacaacttccact |
47929620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 258
Target Start/End: Complemental strand, 3859250 - 3859184
Alignment:
| Q |
192 |
cagctctcaacaagtcatccttttgaattctacgaataggtacggttccttttggacaacttccact |
258 |
Q |
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| T |
3859250 |
cagctctcaataaatcttgcttttgaattcttcgaatggggacagttccttttggacaccttccact |
3859184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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