View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16644_low_1 (Length: 547)
Name: NF16644_low_1
Description: NF16644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16644_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 14 - 536
Target Start/End: Original strand, 32337268 - 32337801
Alignment:
| Q |
14 |
attatcatgtaaagtctggcatgacaggatccattctaagggtaacacgggtagtgttctggtctattattggtaatgaatgaagtagttgagatttggc |
113 |
Q |
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| T |
32337268 |
attatcatgtaaagtctggcatgacaggatccattctaagggtaacacgggtagtgttctggtctattattggtaatgaatgaagtagttgaaatttggc |
32337367 |
T |
|
| Q |
114 |
ttgaaatcatgaatccagttaagtgaaa-ccattttgagtctaatggttttacttataggcannnnnnnnn---actttctgaaattactctgtatatgc |
209 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32337368 |
ttgaaatcatgaatccagttaagtgaaaaccattttgagtctaatggttttacttataggcattttttttttttactttctgaaattactctgtatatgc |
32337467 |
T |
|
| Q |
210 |
aatgaaagagaatatcagataatctttattgaacatatggcaggggttacaagaggaaatttgaaataaatagttccttcatatgtcttccacataaaac |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32337468 |
aatgaaagagaatatcagataatctttattgaacatatggcaggggttacaagaggaaatttgaaataaatagttccttcatatgtcttccacataaaac |
32337567 |
T |
|
| Q |
310 |
gttgtgtatcactatcaactctcagttctttctgggttctgtccttcatcgatcctttggacgagcatctctttgactttgtgtagagcatgttcaaggt |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32337568 |
gttgtgtatcactatcaactctcagttctttctgggttctgtccttcatcgatcctttggacgagcatctctttgactttgtgtagagcatgttcaaggt |
32337667 |
T |
|
| Q |
410 |
tttccagctgcatattttttgtaattcatgagtctgtcttgagttacttggttta-------aaaaactttatttttgctttactgtaacatatttttgg |
502 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32337668 |
tttccagctgcatattttttgtaattcatgagtctgtcttgagttacttggtttaaagcttcaaaaactttatttttgctttactgtaacatatttttgg |
32337767 |
T |
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| Q |
503 |
aaataagaatttcactggtagttccatacttctt |
536 |
Q |
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|||||||||||||||||||||||| |||| |||| |
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| T |
32337768 |
aaataagaatttcactggtagttctatacctctt |
32337801 |
T |
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