View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16644_low_3 (Length: 294)
Name: NF16644_low_3
Description: NF16644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16644_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 1556758 - 1556485
Alignment:
| Q |
1 |
ctcccttctccaactaaaccacctttcaaattgctcatatctcgattttcaattcgcttcaacaagtcgatttaagttgtttgatagatttctacaccat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1556758 |
ctcccttctccaactaaaccacctttcaaattgctcatatctcgattttcaattcgcttcaacaagtcgatttaagttgtttgatagatttctacaccat |
1556659 |
T |
|
| Q |
101 |
ctatgcacatgacccatcaaaatataccaaattatcgagtcatcactcctatgcacaacaaagtagtgatcattgtgtgtatataagacatgttaaatga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1556658 |
ctatgcacatgacccatcaaaatataccaaattatcgagtcatcactcctatgcacaacaaagtagtgatcattgtgtgtatataagacatgttaaatga |
1556559 |
T |
|
| Q |
201 |
atatagaacaacaagtgtgtgatttccattttacaagggagagagtgtgtgagtgtatagaatcataaagtaag |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1556558 |
atatagaacaacaagtgtgtgatttccattttacaagggagagagtgtgtgagtgtatagaatcataaagtaag |
1556485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 16 - 274
Target Start/End: Original strand, 1460180 - 1460438
Alignment:
| Q |
16 |
aaaccacctttcaaattgctcatatctcgattttcaattcgcttcaacaagtcgatttaagttgtttgatagatttctacaccatctatgcacatgaccc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1460180 |
aaaccacctttcaaattgctcatatctcgattttcaattcgcttcaacaagtcgatttaagttgtttgatagatttctacaccatctatgcacatgaccc |
1460279 |
T |
|
| Q |
116 |
atcaaaatataccaaattatcgagtcatcactcctatgcacaacaaagtagtgatcattgtgtgtatataagacatgttaaatgaatatagaacaacaag |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1460280 |
atcaaaatataccaaattatcgagtcatcactcctatgcacaacaaagtagtgatcattgtgtgtatataagacatgttaaatgaatatagaacaacaag |
1460379 |
T |
|
| Q |
216 |
tgtgtgatttccattttacaagggagagagtgtgtgagtgtatagaatcataaagtaag |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1460380 |
tgtgtgatttccattttacaagggagagagtgtgtgagtgtatagaatcataaagtaag |
1460438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 157 - 235
Target Start/End: Original strand, 1453642 - 1453721
Alignment:
| Q |
157 |
aacaaagtagtgatcattgtgtgtatataagacatgttaaatgaatatagaa-caacaagtgtgtgatttccattttaca |
235 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| || ||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
1453642 |
aacaaagtagtgatcattgtgtgaatataagacatgtcaactgaatatagaattaacaagtgtgttatttccattttaca |
1453721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 235
Target Start/End: Complemental strand, 1568075 - 1568002
Alignment:
| Q |
161 |
aagtagtgatcattgtgtgtatataagacatgttaaatgaatatagaacaacaagtgtgtgatttccattttaca |
235 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| || || ||||||| ||||||| || |||||||||||||| |
|
|
| T |
1568075 |
aagtagtgatcattgtgtgcatataagacatgtcaagtggttatagaataacaagtacgt-atttccattttaca |
1568002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 1529070 - 1529018
Alignment:
| Q |
21 |
acctttcaaattgctcatatctcgattttcaattcgcttcaacaagtcgattt |
73 |
Q |
| |
|
||||||||| ||||||||||||| |||| |||||| || |||||||||||||| |
|
|
| T |
1529070 |
acctttcaatttgctcatatctcaatttccaattcactccaacaagtcgattt |
1529018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University