View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16644_low_5 (Length: 243)
Name: NF16644_low_5
Description: NF16644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16644_low_5 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 49040249 - 49040024
Alignment:
| Q |
18 |
aactctacccttggcctctacgtatgctaactcataccaaagtgaactacttgaagtgttaccaaagcggtgtaatgtggaacgagatggctccatatgc |
117 |
Q |
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| T |
49040249 |
aactctacccttggcctctacgtatgctaactcataccaaagtgaactacttgaagtgttaccaaagcgatgtaatgtggaacaagatggctccatatgc |
49040150 |
T |
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| Q |
118 |
cactcacttagttctagattattctgcatagcatccaacactgatctcccacctccatggatgcagaaatgctcaaatgccaatttgaaattcggtacat |
217 |
Q |
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| T |
49040149 |
cactcacttagttctatattattctgcatagcatccaacactgatctcccacctgcatggatgcagaaatgctcaaaagccaatttgaaattcggtacat |
49040050 |
T |
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| Q |
218 |
aatttgatgacttctttctaaacaac |
243 |
Q |
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| T |
49040049 |
agtttgatgacttctttctaaacaac |
49040024 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 19671772 - 19671813
Alignment:
| Q |
40 |
tatgctaactcataccaaagtgaactacttgaagtgttacca |
81 |
Q |
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| T |
19671772 |
tatgccaactcataccaaacagaactacttgaagtgttacca |
19671813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 19742892 - 19742933
Alignment:
| Q |
40 |
tatgctaactcataccaaagtgaactacttgaagtgttacca |
81 |
Q |
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| T |
19742892 |
tatgccaactcataccaaacagaactacttgaagtgttacca |
19742933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 19797196 - 19797155
Alignment:
| Q |
40 |
tatgctaactcataccaaagtgaactacttgaagtgttacca |
81 |
Q |
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| T |
19797196 |
tatgccaactcataccaaacagaactacttgaagtgttacca |
19797155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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