View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16644_low_6 (Length: 243)
Name: NF16644_low_6
Description: NF16644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16644_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 17184931 - 17184703
Alignment:
| Q |
1 |
tttgacgaaaaagaactacattcgctagttttcaaaatatgggcttcagacaaatactatgtcttcacgaagacttggatcgaagagtttgttaaaagaa |
100 |
Q |
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| T |
17184931 |
tttgacgaaaaagaactacattcgctagttttcaaaatatgggcttcagacaaatactatgtcttcacgaagacttggatcgaagagtttgttaaaagaa |
17184832 |
T |
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| Q |
101 |
ggaaattgaataaaggtgatcaaatcggccttcgctgggatcaactcaacaaccgatttgatttctccgttctacatcgagaaatcttagtttgtaattc |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
17184831 |
ggaaattgaataaaggcgatcaaatcggccttcgctgggatcaactcaacaaccgatttgatttctccgttctacactgagaaatcttagtttgtaattc |
17184732 |
T |
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| Q |
201 |
ttcataggtgttgatttcaatgtctactt |
229 |
Q |
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| T |
17184731 |
ttcataggtgttgatttcaatgtctactt |
17184703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 17195515 - 17195743
Alignment:
| Q |
1 |
tttgacgaaaaagaactacattcgctagttttcaaaatatgggcttcagacaaatactatgtcttcacgaagacttggatcgaagagtttgttaaaagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
17195515 |
tttgacgaaaaagaactacattcgctagttttcaaaatatgggcttcagacaaatactatgtcttcacgaagacttggatcgaagagtttattaaaagaa |
17195614 |
T |
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| Q |
101 |
ggaaattgaataaaggtgatcaaatcggccttcgctgggatcaactcaacaaccgatttgatttctccgttctacatcgagaaatcttagtttgtaattc |
200 |
Q |
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| T |
17195615 |
ggaaattgaataaaggtgatcaaatcggccttcgctgggatcaactcaacaaccgatttgatttctcagtcctacatcgagaaatcttagtttgtaattc |
17195714 |
T |
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| Q |
201 |
ttcataggtgttgatttcaatgtctactt |
229 |
Q |
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| T |
17195715 |
ttcataggtgttgcttacaatgtctactt |
17195743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 61 - 173
Target Start/End: Original strand, 17619799 - 17619911
Alignment:
| Q |
61 |
gtcttcacgaagacttggatcgaagagtttgttaaaagaaggaaattgaataaaggtgatcaaatcggccttcgctgggatcaactcaacaaccgatttg |
160 |
Q |
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|||||||| |||||||||| | ||||||||||||| |||||| || |||| ||||| ||||||||||| ||||| ||||||||| |||| | ||||||| |
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| T |
17619799 |
gtcttcaccaagacttggaccaaagagtttgttaacagaagggaactgaagaaaggcgatcaaatcggtcttcgatgggatcaaaacaaccaacgatttg |
17619898 |
T |
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| Q |
161 |
atttctccgttct |
173 |
Q |
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| T |
17619899 |
atttctccgttct |
17619911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 61 - 173
Target Start/End: Complemental strand, 17538557 - 17538445
Alignment:
| Q |
61 |
gtcttcacgaagacttggatcgaagagtttgttaaaagaaggaaattgaataaaggtgatcaaatcggccttcgctgggatcaactcaacaaccgatttg |
160 |
Q |
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|||||||| || ||||||| | ||||||||||||| |||||| || | || |||| |||||||||| ||||| ||||||| | |||| | ||||||| |
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| T |
17538557 |
gtcttcaccaatacttggaccaaagagtttgttaacagaagggaactcaagaaagacgatcaaatcgttcttcgatgggatcgaaacaaccaacgatttg |
17538458 |
T |
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| Q |
161 |
atttctccgttct |
173 |
Q |
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||||||||||||| |
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| T |
17538457 |
atttctccgttct |
17538445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 61 - 173
Target Start/End: Original strand, 17693946 - 17694058
Alignment:
| Q |
61 |
gtcttcacgaagacttggatcgaagagtttgttaaaagaaggaaattgaataaaggtgatcaaatcggccttcgctgggatcaactcaacaaccgatttg |
160 |
Q |
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|||||||| || ||||||| | ||||||||||||| |||||| || | || |||| |||||||||| ||||| ||||||| | |||| | ||||||| |
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| T |
17693946 |
gtcttcaccaaaacttggaccaaagagtttgttaacagaagggaactcaagaaagacgatcaaatcgctcttcgatgggatcgaaacaaccaacgatttg |
17694045 |
T |
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| Q |
161 |
atttctccgttct |
173 |
Q |
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||||||||||||| |
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| T |
17694046 |
atttctccgttct |
17694058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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