View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16644_low_7 (Length: 229)
Name: NF16644_low_7
Description: NF16644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16644_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 23 - 212
Target Start/End: Original strand, 35542054 - 35542243
Alignment:
| Q |
23 |
atcactccattatggaatgataccaaacatagcaaagcattcacaaaacaaatcatttccaaaatgggaactccacagccaccaaaattctcacaccgca |
122 |
Q |
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| T |
35542054 |
atcactccattatggaatgataccaaacatagcaaagcattcacaaaacaaatcatttccaaaatgggaactccacagccaccaaaattctcacaccgca |
35542153 |
T |
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| Q |
123 |
ggattctactcctcaacacacaaaaccgaatcggtagtttcacaaaatgggctattaacaatgtttcattaacattaccaacaacacctt |
212 |
Q |
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| T |
35542154 |
ggattctactcctcaacacacaaaaccgaatcggcagtttcacaaaatgggctattaacaatgtttcattaacattaccaacaacacctt |
35542243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 24 - 212
Target Start/End: Original strand, 35509360 - 35509548
Alignment:
| Q |
24 |
tcactccattatggaatgataccaaacatagcaaagcattcacaaaacaaatcatttccaaaatgggaactccacagccaccaaaattctcacaccgcag |
123 |
Q |
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| T |
35509360 |
tcacaccattatggaacgataccgatcacagcaaagcattcacaaaacaaatcatttccaaaatgggaaatccacagccaccaaaatcctcacaccgcac |
35509459 |
T |
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| Q |
124 |
gattctactcctcaacacacaaaaccgaatcggtagtttcacaaaatgggctattaacaatgtttcattaacattaccaacaacacctt |
212 |
Q |
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| T |
35509460 |
tattcacctcctcaatacacaaaacaaaatcggtagtttcactaaatgggctattaacaatgtttcattaacattgccaacaacacctt |
35509548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 53 - 210
Target Start/End: Original strand, 35527586 - 35527743
Alignment:
| Q |
53 |
agcaaagcattcacaaaacaaatcatttccaaaatgggaactccacagccaccaaaattctcacaccgcaggattctactcctcaacacacaaaaccgaa |
152 |
Q |
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| T |
35527586 |
agcaaagaattcacaaaacaaatcatttccagaatgggaacaccacagccaccaaaaaccgcagaccgcttgatttacctcctcaacacacaaagcaaaa |
35527685 |
T |
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| Q |
153 |
tcggtagtttcacaaaatgggctattaacaatgtttcattaacattaccaacaacacc |
210 |
Q |
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| T |
35527686 |
taggtaatttcattaaatgggctattaacaatgtttcattaacattgccaacaacacc |
35527743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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