View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16644_low_8 (Length: 224)
Name: NF16644_low_8
Description: NF16644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16644_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 283953 - 284144
Alignment:
| Q |
17 |
gtaaactgagtgtaacctcctttctctaagatctgcgctgcacccttgaaatccttcaaaaactcaatcaacatatcacatttaactccacactcatcat |
116 |
Q |
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| T |
283953 |
gtaaactgagtgtaacctcctttctctaagatctgcgctgcacccttgaaatccttcaaaaactcaatcaacatatcacatttaactccacactcatcat |
284052 |
T |
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| Q |
117 |
tactattggtccacaactcatactcgacacgatcatcaggatgaggaacagcctctctccagtcaagattaacattgaccatatccccacca |
208 |
Q |
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| T |
284053 |
tactattggtccacaactcatactcgacacgatcatcaggatgaggaacagcctctctccagtcaagattaacattgaccatatccccacca |
284144 |
T |
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Target: chr1 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 29 - 208
Target Start/End: Complemental strand, 48133727 - 48133548
Alignment:
| Q |
29 |
taacctcctttctctaagatctgcgctgcacccttgaaatccttcaaaaactcaatcaacatatcacatttaactccacactcatcattactattggtcc |
128 |
Q |
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||||| ||||||||||| || || || |||||||| |||||||||| ||| || ||||||||||| ||||||||||||||||||||||| || ||||||| |
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| T |
48133727 |
taaccacctttctctaatatttgtgccgcacccttaaaatccttcacaaattccatcaacatatcgcatttaactccacactcatcattgctgttggtcc |
48133628 |
T |
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| Q |
129 |
acaactcatactcgacacgatcatcaggatgaggaacagcctctctccagtcaagattaacattgaccatatccccacca |
208 |
Q |
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||| ||||||||| ||||||||||| || ||||| || ||||||||||| |||||||| || || ||||||||||||||| |
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| T |
48133627 |
acagctcatactccacacgatcatctgggtgagggacggcctctctccaatcaagatttacgttaaccatatccccacca |
48133548 |
T |
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