View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16645_high_16 (Length: 252)
Name: NF16645_high_16
Description: NF16645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16645_high_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 31966451 - 31966230
Alignment:
| Q |
19 |
aggaatacatgtgaaacctaccaaataatgaa-caaggtttccaaagaaaaaattgtcgacatcctctaaagtctatatggatgatatgatgataaaatc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
31966451 |
aggaatacatgtgaaacctaccaaataatgaaacaaggtttccaaagaaaaaattgacgacatcctctaa-gtctatatggatgatatgatgataaaatc |
31966353 |
T |
|
| Q |
118 |
caaaaaagaggtagattataccatcatcagaagtaagtctttgaacaagcttaaaagtacaacatgagacttaacccatataaatataagtgcacatttg |
217 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31966352 |
caaacaagaggtagattataccatcatcagaagtaagtctttgaacaagcttaaaagtacaacatgagacttaacccatataaatataagtgcacatttg |
31966253 |
T |
|
| Q |
218 |
atgtacgagaaggtaagttccta |
240 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
31966252 |
atgtacgagaaggtaagttccta |
31966230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University