View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16645_high_19 (Length: 207)
Name: NF16645_high_19
Description: NF16645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16645_high_19 |
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Alignment Details
Target: chr6 (Bit Score: 122; Significance: 9e-63; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 62 - 191
Target Start/End: Original strand, 6631487 - 6631616
Alignment:
| Q |
62 |
agaatgttttcatcgcaatctaattaacaggtcaaaaaggcttattcaaaagctgaaatcaattcctatgattaatttcataaaagtctaattaagaggt |
161 |
Q |
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| T |
6631487 |
agaatgttttcatcgcagtctaattaacaggtcaaaaaggcttattcaaaagctgaaatcaattcctatgattaatttcataaaagtctaattaagaggt |
6631586 |
T |
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| Q |
162 |
caaaagggcttattcaaaagccaagtaggt |
191 |
Q |
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| T |
6631587 |
caaaaaggcttattcaaaagccaagtaggt |
6631616 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 113 - 164
Target Start/End: Original strand, 27153132 - 27153183
Alignment:
| Q |
113 |
gctgaaatcaattcctatgattaatttcataaaagtctaattaagaggtcaa |
164 |
Q |
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| T |
27153132 |
gctgaaatcaattcccattaataatttcataaaagactaattaacaggtcaa |
27153183 |
T |
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