View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16645_high_3 (Length: 520)
Name: NF16645_high_3
Description: NF16645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16645_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 197 - 503
Target Start/End: Complemental strand, 40187383 - 40187077
Alignment:
| Q |
197 |
cttgtcaaagtaattttaacaaaaattactgagatttttcacttgtaaatattcacggggcatagacaaaatccttcatccatctagctcctttcagtca |
296 |
Q |
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| T |
40187383 |
cttgtcaaagtaattttaacaaaaattactgagatttttcacttgtaaatattcacggggcatagacaaaatccttcatccatctagctcccttcagtca |
40187284 |
T |
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| Q |
297 |
cttcaaaaacagttcgtagatactgctctggacccctacaatacttcctaactagaggacatgtatctgccaccagtaccccactgttataataataggg |
396 |
Q |
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| T |
40187283 |
cttcaaaaacagttcgtagatactgctctggacccctacaatacttcctaactagaggacatgtatctgccaccagtaccccactgttataataataggg |
40187184 |
T |
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| Q |
397 |
gctgtaattccaactttgtactacaccattctccactgctaatgcggtgtgggcttgtatctccttttggatattcattaggaacacacacaattaccat |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40187183 |
gctgtaattccaactttgtactacaccattctccactgctaatgcggtgtgggcttgtatctccttttggatattcattaggaacacacacaattaccat |
40187084 |
T |
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| Q |
497 |
taggtat |
503 |
Q |
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||||||| |
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| T |
40187083 |
taggtat |
40187077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 40187626 - 40187442
Alignment:
| Q |
13 |
aatatcacatcttctacgaaaggttgcaaatgcgtctatactatcatgtgttaaacaaccagacaatttacaattacaagtacgagagttctaaataccc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40187626 |
aatatcacatcttctacgaaaggttgcaaatgcgtctatactatcatgtgttaaacaaccagacaatttacaattacaagtacgagagttctaaataccc |
40187527 |
T |
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| Q |
113 |
caactagagacacgatgcatgtgctagactgtcgggcaaccagaccatcgaccatttataaacacattatcatacgtgtcgcagc |
197 |
Q |
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| T |
40187526 |
caactagagacacgatgcatgtgctagactgtcgggcaaccagaccatcgaccatttataaacacattatcatacgtgtcgcagc |
40187442 |
T |
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