View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16645_high_9 (Length: 321)
Name: NF16645_high_9
Description: NF16645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16645_high_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 15 - 310
Target Start/End: Original strand, 28836008 - 28836303
Alignment:
| Q |
15 |
caaaggtgtaacataattttaggcacagcaaggggactggcctatctacatgaggaattccacatttccattatacatagagatataaagactagcaata |
114 |
Q |
| |
|
||||||||| | ||||||||||| |||||||| || ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28836008 |
caaaggtgtgatataattttaggaacagcaagagggctggcctgtcttcatgaggaattccacatttccattatacatagagatataaagactagcaata |
28836107 |
T |
|
| Q |
115 |
tactccttgatgataatcttcaccccaaaattgctgattttggattggcgcggcttttgccaggggatcgttctcatctaagcactggagttgcaggaac |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28836108 |
tactccttgatgataatcttcaccccaaaattgctgattttggattggcgcggcttttgccaggggatcgttctcatctaagcactggagttgcaggaac |
28836207 |
T |
|
| Q |
215 |
attgtaaggcaaaacaattttattcacttagtttacatcatatttatttgaggagcatatgtaaagaagagagaacttaaaacttaccactttcat |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28836208 |
attgtaaggcaaaacaattttattcacttagtttacatcatatttatttgaggagcatatgtaaagaagagagaacttaaaacttaccactttcat |
28836303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 15 - 252
Target Start/End: Original strand, 28826558 - 28826795
Alignment:
| Q |
15 |
caaaggtgtaacataattttaggcacagcaaggggactggcctatctacatgaggaattccacatttccattatacatagagatataaagactagcaata |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
28826558 |
caaaggtgtaacataattttaggcacagcaaggggactggcctatctacatgaggaattccacatttccattatacatagagatataaagagtagcaata |
28826657 |
T |
|
| Q |
115 |
tactccttgatgataatcttcaccccaaaattgctgattttggattggcgcggcttttgccaggggatcgttctcatctaagcactggagttgcaggaac |
214 |
Q |
| |
|
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
28826658 |
tcctccttgatgataatcttcatcccaaaattgctgattttggattggcgcggcttttgccaggggatcgatctcatctaagcacaggagttgcaggaac |
28826757 |
T |
|
| Q |
215 |
attgtaaggcaaaacaattttattcacttagtttacat |
252 |
Q |
| |
|
|||||||||||||||||||| |||||| ||| |||||| |
|
|
| T |
28826758 |
attgtaaggcaaaacaatttcattcacctagattacat |
28826795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 27 - 163
Target Start/End: Original strand, 28820162 - 28820298
Alignment:
| Q |
27 |
ataattttaggcacagcaaggggactggcctatctacatgaggaattccacatttccattatacatagagatataaagactagcaatatactccttgatg |
126 |
Q |
| |
|
|||||||||||||||||||| || || ||||||| ||||| || |||||| ||| ||| |||||||| ||||||||||||| |||||| ||| | |||| |
|
|
| T |
28820162 |
ataattttaggcacagcaagaggtctatcctatctgcatgaagatttccacgtttgcatcatacatagggatataaagactaacaatatcctcttagatg |
28820261 |
T |
|
| Q |
127 |
ataatcttcaccccaaaattgctgattttggattggc |
163 |
Q |
| |
|
|| ||||||| || | ||||||||||||||||||||| |
|
|
| T |
28820262 |
atgatcttcagcctagaattgctgattttggattggc |
28820298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University