View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16645_low_12 (Length: 322)
Name: NF16645_low_12
Description: NF16645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16645_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 114; Significance: 8e-58; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 2047659 - 2047499
Alignment:
| Q |
1 |
ctgtttagctgctccaccttggtatgtagctatcctcccata----------caaagtggagtgtacacttcaaaaggaattttgaaaatataattatta |
90 |
Q |
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| T |
2047659 |
ctgtttagctgctccaccttggtatgtagctatcctcccatatcctcccatacaaagtggagtgtacacttcaaaaggaattttaaagttataattatta |
2047560 |
T |
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| Q |
91 |
gtttgatggacaaagagatatgttaaattgttttaggtcgcgtcacctttttatacatttc |
151 |
Q |
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| T |
2047559 |
gtttgatggacaaagagatatgttaaattgttttaggtcgcgtcacctttttatacatttc |
2047499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 166 - 322
Target Start/End: Complemental strand, 2046399 - 2046258
Alignment:
| Q |
166 |
atcaaatattccacggaaatatcaaatttggaaatacaaaaactaaaatcaattgtatgttggattgaaaaattaaacattactttgtgagatgatgatt |
265 |
Q |
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| T |
2046399 |
atcaaatattccacggaaatatcaaatttggaaatacaaaaactaaaatcaattgtatgtt---------------acattactttgtgagatgatgatt |
2046315 |
T |
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| Q |
266 |
atagaagaagaatgagatataagaatgaataaaccggtgtggtatatatacaagtgt |
322 |
Q |
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| T |
2046314 |
atagaagaagaatgagatataagaatgaataaacgggtgtggtatatatacaagtgt |
2046258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 149 - 216
Target Start/End: Complemental strand, 2046466 - 2046399
Alignment:
| Q |
149 |
ttcatttggaccataaaatcaaatattccacggaaatatcaaatttggaaatacaaaaactaaaatca |
216 |
Q |
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| T |
2046466 |
ttcatttgaaccataaaatcaaatattccacggaaatatcaaatttggaaatacaaaaactaaaatca |
2046399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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