View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16645_low_18 (Length: 288)
Name: NF16645_low_18
Description: NF16645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16645_low_18 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 28835628 - 28835898
Alignment:
| Q |
18 |
gtcttgtgtgcagtgaacatatgaccacacttttctattatgtatatgttctttctcttaggtagttatttcattagtaaccatccattcattttttgac |
117 |
Q |
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| T |
28835628 |
gtcttgtgtgcagtgaacatatgaccacacttttctattatgtatatgttctttctctttggtagttatttcattagtaaccatccattcattttttgac |
28835727 |
T |
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| Q |
118 |
tgtaaaataaacttcattcattcaaatggtaaaatctgaataatacaatctgtaactacccattcataaaagggagaggagaggtatttcaatttatttt |
217 |
Q |
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| T |
28835728 |
tgtaaaataaacttcattcattcaaatggtaaaatctgaataatacaatctgtaactacccattcataaaagggagaggagaggtatttcaatttatttt |
28835827 |
T |
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| Q |
218 |
gaatttcaaaataaaacctcgttgactttaattaccattagatcaaacaatcatcacattcgaccattttt |
288 |
Q |
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| T |
28835828 |
gaatttcaaaataaaacctcggtgactttaattaccattagatcaaacaatcatcacactcgaccattttt |
28835898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 278
Target Start/End: Original strand, 34661385 - 34661454
Alignment:
| Q |
209 |
atttattttgaatttcaaaataaaacctcgttgactttaattaccattagatcaaacaatcatcacattc |
278 |
Q |
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| T |
34661385 |
atttattttgaatttcaaaatgaaaatccattgactttacttattattaggtcaaacaatcatcgcattc |
34661454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 169 - 284
Target Start/End: Original strand, 38272416 - 38272531
Alignment:
| Q |
169 |
gtaactacccattcataaaagggagaggagaggtatttcaatttattttgaatttcaaaataaaacct-cgttgactttaattaccattagatcaaacaa |
267 |
Q |
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| T |
38272416 |
gtaactacctattaataaaagggagaggagagatattttaatttagtttgaatttcaaaataaaacatccattaactttaatt-tcattaggtcaaacaa |
38272514 |
T |
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| Q |
268 |
tcatcacattcgaccat |
284 |
Q |
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| T |
38272515 |
ccatcatattagaccat |
38272531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 277
Target Start/End: Original strand, 29060743 - 29060818
Alignment:
| Q |
203 |
atttcaatttattttgaatttcaaaataaaa-cctcgttgactttaattaccattagatcaaacaatcatcacatt |
277 |
Q |
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| T |
29060743 |
atttgaattcattttgattttcaaaataaaatcctcggtaactttaattaccattagatcaaacaaccatcccatt |
29060818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 209 - 267
Target Start/End: Complemental strand, 32627965 - 32627907
Alignment:
| Q |
209 |
atttattttgaatttcaaaataaaacctcgttgactttaattaccattagatcaaacaa |
267 |
Q |
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| T |
32627965 |
atttattttgaatttcaaaataaaacctcattgatttaaattaccattaaaccaaacaa |
32627907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 29060662 - 29060702
Alignment:
| Q |
46 |
acttttctattatgtatatgttctttctcttaggtagttat |
86 |
Q |
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| T |
29060662 |
acttttctattatgtatatgtcctttctcttatgcagttat |
29060702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 152
Target Start/End: Original strand, 16544993 - 16545026
Alignment:
| Q |
119 |
gtaaaataaacttcattcattcaaatggtaaaat |
152 |
Q |
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| T |
16544993 |
gtaaaataaacttcattcattcaaatgttaaaat |
16545026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 273
Target Start/End: Complemental strand, 28318799 - 28318712
Alignment:
| Q |
185 |
aaaagggagaggagaggtatttcaatttattttgaatttcaaaataaaacctcgttgactttaattaccattagatcaaacaatcatca |
273 |
Q |
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| T |
28318799 |
aaaagggagaagagaggaatatcactt-atttttaattttaaaataagaccccattgaagttaattaccattagaccaaacaaccatca |
28318712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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