View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16645_low_2 (Length: 560)
Name: NF16645_low_2
Description: NF16645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16645_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 499; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 1 - 545
Target Start/End: Original strand, 4635600 - 4636141
Alignment:
| Q |
1 |
tggatcaacaaattaacataattgaatttagtaaaagtactgaattgaggtctaatcttgcagactgccatgaagttcttgcaaactcattatttcttat |
100 |
Q |
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| T |
4635600 |
tggatcaacaaattaacataattgaatttagtaaaattactgaattgaggtctaatcttgcagactgccatgaagtttttgcaaactcattatttcttat |
4635699 |
T |
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| Q |
101 |
gggagagattggaggtaacgacttcaattatcctttatttatacgaaggagcatagtagagattaaaacatacgtgccacatgtaatcaatgcaatcact |
200 |
Q |
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| T |
4635700 |
gggagagatcggaggtaacgacttcaattatcctttatttatacgaaggagcatagtagagattaaaacatacgtgccacatgtaatcagtgcaatcact |
4635799 |
T |
|
| Q |
201 |
tcagcaatcaatgtaagattatagtattatatgaagcaatatctgtctgcattactattattcgaatttcaactttccaagcatacttaattttctattt |
300 |
Q |
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| T |
4635800 |
tcagcaatcaatgtaagattata---ttatatgaagcaatatctgtctgcattactattattcgaatttcaactttccaagcatacttaattttctattt |
4635896 |
T |
|
| Q |
301 |
tatgtcttcacaggagttgattgatctaggtgcacgcacgctcatgatccctgggaatttcccattgggatgcagtgtaatttatttaacaaaatatgaa |
400 |
Q |
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| T |
4635897 |
tatgtcttcacaggagttgattgatctaggtgcacgcacgctcatgatccctgggaatttcccattgggatgcaatgtaatttacttaacaaaatatgaa |
4635996 |
T |
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| Q |
401 |
actacagataagagccaatacgactcagctggttgcttgaagtggttaaacgaatttgctgaattttataatcaggagctccaatatgagttacataggc |
500 |
Q |
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| T |
4635997 |
actacagataagagccaatatgactcagctggttgcttgaagtggttaaacgaatttgctgaattttataatcaggagctccaatatgagttacataggc |
4636096 |
T |
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| Q |
501 |
taagaagaattcatcctcatgctactatcatctatgctgattact |
545 |
Q |
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| T |
4636097 |
taagaagaattcatcctcatgctactataatctatgctgattact |
4636141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 291 - 543
Target Start/End: Original strand, 4659044 - 4659296
Alignment:
| Q |
291 |
ttttctattttatgtcttcacaggagttgattgatctaggtgcacgcacgctcatgatccctgggaatttcccattgggatgcagtgtaatttatttaac |
390 |
Q |
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| T |
4659044 |
ttttgtattttatgtcttcgcaggagttgattgatctaggggcacgcacgcttatggtccctggaaatttcccattgggatgtagtgcagtccatttaac |
4659143 |
T |
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| Q |
391 |
aaaatatgaaactacagataagagccaatacgactcagctggttgcttgaagtggttaaacgaatttgctgaattttataatcaggagctccaatatgag |
490 |
Q |
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| T |
4659144 |
aacgtatgaaaccacggataagaaccaatatgactcatttggttgcttgaagtggttaaatgaattttctgaattttataaccagaaactccaacatgag |
4659243 |
T |
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| Q |
491 |
ttacataggctaagaagaattcatcctcatgctactatcatctatgctgatta |
543 |
Q |
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| T |
4659244 |
atacataggcttcgagtaattcatcctcatgctaatatcatctatgctgatta |
4659296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 59 - 222
Target Start/End: Original strand, 4658806 - 4658969
Alignment:
| Q |
59 |
tgcagactgccatgaagttcttgcaaactcattatttcttatgggagagattggaggtaacgacttcaattatcctttatttatacgaaggagcatagta |
158 |
Q |
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| T |
4658806 |
tgcagcctgccatgaagttcttggaaagtcattatttcttgtgggggagattggaggcaacgacttcaattatcctttacatatacgacagagcataaca |
4658905 |
T |
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| Q |
159 |
gagattaaaacatacgtgccacatgtaatcaatgcaatcacttcagcaatcaatgtaagattat |
222 |
Q |
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| T |
4658906 |
aagcttaaagaatatgtaccacatgtaatcaatgcaataactttagcaattaatgtaagattat |
4658969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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