View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16645_low_21 (Length: 252)
Name: NF16645_low_21
Description: NF16645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16645_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 31966451 - 31966230
Alignment:
| Q |
19 |
aggaatacatgtgaaacctaccaaataatgaa-caaggtttccaaagaaaaaattgtcgacatcctctaaagtctatatggatgatatgatgataaaatc |
117 |
Q |
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| T |
31966451 |
aggaatacatgtgaaacctaccaaataatgaaacaaggtttccaaagaaaaaattgacgacatcctctaa-gtctatatggatgatatgatgataaaatc |
31966353 |
T |
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| Q |
118 |
caaaaaagaggtagattataccatcatcagaagtaagtctttgaacaagcttaaaagtacaacatgagacttaacccatataaatataagtgcacatttg |
217 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31966352 |
caaacaagaggtagattataccatcatcagaagtaagtctttgaacaagcttaaaagtacaacatgagacttaacccatataaatataagtgcacatttg |
31966253 |
T |
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| Q |
218 |
atgtacgagaaggtaagttccta |
240 |
Q |
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||||||||||||||||||||||| |
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| T |
31966252 |
atgtacgagaaggtaagttccta |
31966230 |
T |
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