View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16645_low_22 (Length: 250)
Name: NF16645_low_22
Description: NF16645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16645_low_22 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 155331 - 155092
Alignment:
| Q |
1 |
aacaccaacccacacaactccggagcatccgtcaaaggaggctcatcaactactggaaatccgtgatgttctgtcactttcaaagcgtgcaatatattcc |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
155331 |
aacaccaacccacacaactcgggagcatccgtcaaaggaggctcatcaactactggaaatccgtgatgttctgtcactttcaaagcgtgcaatatattcc |
155232 |
T |
|
| Q |
101 |
ccactttttcgatcccacaaaaagaaaacagtggaccagaaacaacatcccctgcaactaaattcctcatgtatggctctgcatgtgcttccatataagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
155231 |
ccactttttcgatcccacaaaaagaaaacagtggaccagaaacaacatcccctgcaactaaattcctcatgtatggctctgcatgtgcttccatataagg |
155132 |
T |
|
| Q |
201 |
tagtcccttcaacgccacaatctgatcataaacacctttg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
155131 |
tagtcccttcaacgccacaatctgatcataaacacctttg |
155092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 240
Target Start/End: Original strand, 56469226 - 56469462
Alignment:
| Q |
4 |
accaacccacacaactccggagcatccgtcaaaggaggctcatcaactactggaaatccgtgatgttctgtcactttcaaagcgtgcaatatattcccca |
103 |
Q |
| |
|
||||||||||| ||||| ||||| || || ||||||||||||| || ||||| || | |||| ||||| || |||| ||||| |||||||||| |
|
|
| T |
56469226 |
accaacccacataactctggagcttctaagaatggaggctcatcaatcacaggaaacccattatgtcgcgtcacctttaaagtgtgcacaatattcccca |
56469325 |
T |
|
| Q |
104 |
ctttttcgatcccacaaaaagaaaacagtggaccagaaacaacatcccctgcaactaaattcctcatgtatggctctgcatgtgcttccatataaggtag |
203 |
Q |
| |
|
||||||| || ||| | || | |||||||||||||||||||||||| || |||||||||| ||||||||| || |||||||| |||||| |||||| | |
|
|
| T |
56469326 |
ctttttcaataccagagaatgtaaacagtggaccagaaacaacatcaccggcaactaaatgcctcatgtacggttctgcatgcacttccaaataaggcaa |
56469425 |
T |
|
| Q |
204 |
tcccttcaacgccacaatctgatcataaacacctttg |
240 |
Q |
| |
|
||||||| |||| || |||||||||||||||||| |
|
|
| T |
56469426 |
ccccttcatttccactatttgatcataaacacctttg |
56469462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 206
Target Start/End: Original strand, 24329119 - 24329234
Alignment:
| Q |
91 |
aatatattccccactttttcgatcccacaaaaagaaaacagtggaccagaaacaacatcccctgcaactaaattcctcatgtatggctctgcatgtgctt |
190 |
Q |
| |
|
||||||||||| || |||||||| ||| |||| | | || |||||| || |||||||| | || | ||| |||||||||||| || || |||||||||| |
|
|
| T |
24329119 |
aatatattcccaaccttttcgatgccagaaaaggtcatcaatggacccgagacaacatcacgtgtagctatattcctcatgtaaggttcggcatgtgctt |
24329218 |
T |
|
| Q |
191 |
ccatataaggtagtcc |
206 |
Q |
| |
|
||| |||||| ||||| |
|
|
| T |
24329219 |
ccaaataaggaagtcc |
24329234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University