View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16645_low_3 (Length: 541)
Name: NF16645_low_3
Description: NF16645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16645_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 338
Target Start/End: Original strand, 26794034 - 26794348
Alignment:
| Q |
19 |
acaaccctcacatataatacgaagagagtacaagaggtactccaacacatatatacaacaataatccatgtacaactagctataaattaataattaggga |
118 |
Q |
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| T |
26794034 |
acaacactcacatataatacgaagagagtacaagagatactccaacacatatatacaacaataatccatgtacaattagctataaattaataattaggga |
26794133 |
T |
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| Q |
119 |
tatctaatcccccacatatatagatcaacaaactatatatttctcgaattgaagggagcaacacaccgctagctcatattacaaataaaaccgaatctaa |
218 |
Q |
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| T |
26794134 |
tgtctaatcctccacata----gatcaacaaactatatatttctcgaatcgaagg-agcaacacacctctagctcatattacaaataaaaccgaatctaa |
26794228 |
T |
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| Q |
219 |
attgaacaaaaaatcattatctcaacgccaccttaatatactctatcaaagtcgttgcaaatagatccgagttagagaaaatacactcatttacgaagct |
318 |
Q |
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| T |
26794229 |
attcaacaaaaaatcattatctcaaagccaccttaatatactctatcaacgtcgttgcaaatagatccgagttagagaaaatacactcatttacgaagct |
26794328 |
T |
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| Q |
319 |
cctagatagcctatatcact |
338 |
Q |
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| T |
26794329 |
cctagatagcctataccact |
26794348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 365 - 530
Target Start/End: Original strand, 26794345 - 26794508
Alignment:
| Q |
365 |
cacttcctaactttaggtttcggagcataggataggaggcaagcatg-aaaacaatgatagcaacttcccacacgcattgccaaagatatctccggccaa |
463 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26794345 |
cacttcctaactttaggtttcggagcataggataggaggcaagcatggaaaacaatgatagcaacttcccacacgcattgccaaagatatctccggccaa |
26794444 |
T |
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| Q |
464 |
ctaaacacctatgcatgtaggaggttcaaagtttgatcactatactaacaagttttcttcatctcac |
530 |
Q |
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| T |
26794445 |
ctaaacacctatgcatgt---aggttcaaagtttgatcactatactaacaagttttcttcatgtcac |
26794508 |
T |
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