View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16645_low_5 (Length: 468)
Name: NF16645_low_5
Description: NF16645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16645_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 113; Significance: 5e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 14 - 147
Target Start/End: Complemental strand, 25615444 - 25615311
Alignment:
| Q |
14 |
aaaattacaaattcaaggacatcgaacatagaaagaatttatgtaatacattgagaacaaaaatttcaattcagttgacnnnnnnngattctatatcgaa |
113 |
Q |
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| T |
25615444 |
aaaattacaaattcaaggacatcgaacatagaaagaatttatgtaatacattgagaacaaaaatttcaattcagttgacaaaaaaagattctatatcgaa |
25615345 |
T |
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| Q |
114 |
gctaaaacatattaagcaatgtatctcattgaaa |
147 |
Q |
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| T |
25615344 |
gctaaaacatattaagcaatgtatctcattgaaa |
25615311 |
T |
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Target: chr6 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 147 - 290
Target Start/End: Complemental strand, 24992972 - 24992809
Alignment:
| Q |
147 |
atcagaggtgacctcttcaactgtcttttctcaaagtcattcaaagtttccgggctttgatctccgcttgagcttctga--------------------t |
226 |
Q |
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| T |
24992972 |
atcagaggtgacctcttcaactgtcttttctctaagtcattcaaagttttcgggctatgatctccgcttgagcttctgattaattgaatatagagcttct |
24992873 |
T |
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| Q |
227 |
gattatctgtaactataaatagggagagaaggcaccacaatcaacgaacacaacaaaattgagt |
290 |
Q |
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| T |
24992872 |
gattatctgtaaccacaaatagggagagaagacaccacaatcaacgaacacaataaaattgagt |
24992809 |
T |
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