View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16645_low_6 (Length: 449)
Name: NF16645_low_6
Description: NF16645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16645_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 24 - 439
Target Start/End: Original strand, 55954817 - 55955232
Alignment:
| Q |
24 |
acaatgcagccagaggaagctcaatattagctaagccaagcgaaattcccggacacattcttcttcctcccccaaaaggcatgtaatcaaagctattatt |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55954817 |
acaatgcagccagaggaagctcaatattagctaagccaagcgaaattcccggacacattcttcttcctcccccaaaaggcatgtaatcaaagctattatt |
55954916 |
T |
|
| Q |
124 |
attgttcaatttattaaaatcaaaaccagtactatcattaaacctttcaggtataaacttctttgcatcataccaatgtttgggatctcttccaattgcc |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55954917 |
attgttcaatttattaaaatcaaaaccagtactatcattaaacctttcaggtataaacttctttgcatcataccaatgtttgggatctcttccaattgcc |
55955016 |
T |
|
| Q |
224 |
catgcatttactatcacgctagtctttattggtatttcatatccatctatgttgcacgcttccctgcattctcttggaagcaaagtaaaaggtgggtgta |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55955017 |
catgcatttactatcacgctagtctttattggtatttcatatccatctatgttgcaagcttccctgcattctcttggaagcaaagtaaaaggtgggtgta |
55955116 |
T |
|
| Q |
324 |
acctcatggtttctttgatcactgacttcaagtaactaagttcatgtagatcactctcatatattctctttttccctttaacagcttctcttatttcgga |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55955117 |
acctcatggtttctttgatcactgacttcaagtaactaagttcatgtagatcactctcatatattctctttttccctttaacagcttctcttatttcgga |
55955216 |
T |
|
| Q |
424 |
ttgtgctttcttcatc |
439 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
55955217 |
ttgtgctttcttcatc |
55955232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 26 - 439
Target Start/End: Original strand, 55958372 - 55958788
Alignment:
| Q |
26 |
aatgcagccagaggaagctcaatattagctaagccaagcgaaattcccggacacattcttcttcctcccccaaaaggcatgtaatcaaagctattattat |
125 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||| |||||||| ||||| |||||| ||||||||| |
|
|
| T |
55958372 |
aatgcagcaagaggaagctcaatattagctaagccaaacaaaattcctggacacattcttcttcctcctccaaaagggatgtattcaaagttattattat |
55958471 |
T |
|
| Q |
126 |
tg---ttcaatttattaaaatcaaaaccagtactatcattaaacctttcaggtataaacttctttgcatcataccaatgtttgggatctcttccaattgc |
222 |
Q |
| |
|
| |||| |||||||||||||||| |||| |||| |||||| |||||||||||||||| |||||||||||||| |||||||||||||| ||||| |
|
|
| T |
55958472 |
tactattcactttattaaaatcaaaatatttactgtcatgaaacctctcaggtataaacttctctgcatcataccaatatttgggatctcttcacattgc |
55958571 |
T |
|
| Q |
223 |
ccatgcatttactatcacgctagtctttattggtatttcatatccatctatgttgcacgcttccctgcattctcttggaagcaaagtaaaaggtgggtgt |
322 |
Q |
| |
|
||| |||||||||| ||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||| |||||| ||| |
|
|
| T |
55958572 |
ccaagcatttactaacacattagtctttattggtatttcatatccacctatgttgcatgcttccctgcattctcttataagcaaagtagcaggtggatgt |
55958671 |
T |
|
| Q |
323 |
aacctcatggtttctttgatcactgacttcaagtaactaagttcatgtagatcactctcatatattctctttttccctttaacagcttctcttatttcgg |
422 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||| ||||||| | |||||||||||| | |
|
|
| T |
55958672 |
aacctcatagtttctttgatcactgaattcaagtaactaagttcttgtagatcactctcatatgttctctttttacctttaaaggtttctcttatttcag |
55958771 |
T |
|
| Q |
423 |
attgtgctttcttcatc |
439 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
55958772 |
attgtgccttcttcatc |
55958788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 228; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 24 - 396
Target Start/End: Original strand, 41795583 - 41795957
Alignment:
| Q |
24 |
acaatgcagccagaggaagctcaatattagctaagccaagcgaaattcccggacacattcttcttcctcccccaaaaggcatgtaatcaaagctattatt |
123 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| | |||| ||||| |||||| ||||||| |
|
|
| T |
41795583 |
acaatgcagctagaggaagctcaatgttagctaagccaagcgaaattcccggacacattcttcttccttccctagaagggatgtattcaaagttattatt |
41795682 |
T |
|
| Q |
124 |
attgttcaatttattaaaatcaaaaccagtactatcattaaacctttcaggtataaacttctttgcatcataccaatgtttgggatctcttccaattgcc |
223 |
Q |
| |
|
| | |||| ||||||||| |||||| | |||| || | |||||| | | ||||||| || | ||||||||| |||| ||||||||||||||| |||||| |
|
|
| T |
41795683 |
actattcactttattaaattcaaaatctttactgtcctgaaacctcttatgtataaaattatctgcatcatatcaatatttgggatctcttccgattgcc |
41795782 |
T |
|
| Q |
224 |
catgcatttactatcacgctagtctttattggtatttcatatccatctatgttgcacgcttccctgcattctcttggaagcaaagtaaaaggtgggtgta |
323 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41795783 |
catgcatttactatcacactagtctttataggtatttcatatccacctatgttgcacgcttccctgcattctcttggaagcaaagtaaaaggtggatgta |
41795882 |
T |
|
| Q |
324 |
ac--ctcatggtttctttgatcactgacttcaagtaactaagttcatgtagatcactctcatatattctcttttt |
396 |
Q |
| |
|
|| ||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
41795883 |
acctctcattgtttctttgatcactgactttaagtaaccaagttcatgtagatcactctcatatattctcttttt |
41795957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 26 - 439
Target Start/End: Original strand, 12425149 - 12425559
Alignment:
| Q |
26 |
aatgcagccagaggaagctcaatattagctaagccaagcgaaattcccggacacattcttcttcctcccccaaaaggcatgtaatcaaagctattattat |
125 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||| | ||||||| |||||||||||||||||||| |||||||| | || | ||||||||||| || |
|
|
| T |
12425149 |
aatgcagccagaggaagctcaatatttgccaagccaaacaaaattcctggacacattcttcttcctcctccaaaagggaaatactgaaagctattatcat |
12425248 |
T |
|
| Q |
126 |
tgttcaatttattaaaatcaaaaccagtactatcattaaacctttcaggtataaacttctttgcatcataccaatgtttgggatctcttccaattgccca |
225 |
Q |
| |
|
| || ||||||||||||||||||||||||||||| |||||| || ||||||||||||| |||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
12425249 |
t---cactttattaaaatcaaaaccagtactatcatgaaacctctccggtataaacttctcagcatcagaccaatgttcgggatctcttccaattgccca |
12425345 |
T |
|
| Q |
226 |
tgcatttactatcacgctagtctttattggtatttcatatccatctatgttgcacgcttccctgcattctcttggaagcaaagtaaaaggtgggtgtaac |
325 |
Q |
| |
|
|||||||| ||| | | |||| |||| ||||||||||||||| |||||||||||||||||||||||||||| ||||| ||| ||||||||||||| |
|
|
| T |
12425346 |
tgcatttaatattaagttagtttttaaaggtatttcatatccacctatgttgcacgcttccctgcattctctcatgagcaatgtagcaggtgggtgtaac |
12425445 |
T |
|
| Q |
326 |
ctcatggtttctttgatcactgacttcaagtaactaagttcatgtagatcactctcatatattctctttttccctttaacagcttctcttatttcggatt |
425 |
Q |
| |
|
|||| |||||||||||||||| |||||||||| | ||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||| | || |
|
|
| T |
12425446 |
ctcagggtttctttgatcactaacttcaagtacccaagtttatgtagatcactctcatatattctcttcttacctttaacagcttctcttatttcagctt |
12425545 |
T |
|
| Q |
426 |
gtgctttcttcatc |
439 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
12425546 |
gtgccttcttcatc |
12425559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 29 - 433
Target Start/End: Complemental strand, 12268533 - 12268132
Alignment:
| Q |
29 |
gcagccagaggaagctcaatattagctaagccaagcgaaattcccggacacattcttcttcctcccccaaaaggcatgtaatcaaagctattattattgt |
128 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||| | ||| ||| |||||||||||||||||||| |||||||| ||||| | ||||||||||| ||| |
|
|
| T |
12268533 |
gcagccagaggaagctcaatatttgctaaaccaaacaaaactcctggacacattcttcttcctcctccaaaagggatgtactgaaagctattatcatt-- |
12268436 |
T |
|
| Q |
129 |
tcaatttattaaaatcaaaaccagtactatcattaaacctttcaggtataaacttctttgcatcataccaatgtttgggatctcttccaattgcccatgc |
228 |
Q |
| |
|
|| |||||||||||||||||||||| |||||| |||||| |||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
12268435 |
-cactttattaaaatcaaaaccagtattatcatgaaacctctcaggtataaacttctctgcatcagaccaatgattgggatctcttccaattgcccatgc |
12268337 |
T |
|
| Q |
229 |
atttactatcacgctagtctttattggtatttcatatccatctatgttgcacgcttccctgcattctcttggaagcaaagtaaaaggtgggtgtaacctc |
328 |
Q |
| |
|
||||| ||| | |||||||||| |||||||||||||| |||||||||| ||||||||||||||||||| ||| | | | |||||||||||||||| |
|
|
| T |
12268336 |
atttaatattaaattagtctttataggtatttcatatcctcctatgttgcatgcttccctgcattctcttgtaagtattgcaccaggtgggtgtaacctc |
12268237 |
T |
|
| Q |
329 |
atggtttctttgatcactgacttcaagtaactaagttcatgtagatcactctcatatattctctttttccctttaacagcttctcttatttcggattgtg |
428 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||| | |||||| ||||| |||||||| || |||||| | ||||||||||||| | ||||| |
|
|
| T |
12268236 |
agggtttctttgatcactgacttcaagtaactaagttcatgcaaatcactttcataaattctcttcttacctttacaaacttctcttatttcagcttgtg |
12268137 |
T |
|
| Q |
429 |
ctttc |
433 |
Q |
| |
|
||||| |
|
|
| T |
12268136 |
ctttc |
12268132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 206 - 376
Target Start/End: Complemental strand, 7154428 - 7154255
Alignment:
| Q |
206 |
ggatctcttccaattgcccatgcatttactatcacgctagtctttattggtatttcatatccatctatgttgcacgcttccctgcattctcttggaagca |
305 |
Q |
| |
|
||||||||| | | |||||||||||||| ||||| |||| ||| ||||||||||||| ||||||||| || | ||| |||||||||| || | || |
|
|
| T |
7154428 |
ggatctcttgccactgcccatgcatttatcatcactttagtattttttggtatttcataaccatctatgatggtcaattcagtgcattctctagggacca |
7154329 |
T |
|
| Q |
306 |
a---agtaaaaggtgggtgtaacctcatggtttctttgatcactgacttcaagtaactaagttcatgtagatca |
376 |
Q |
| |
|
| || ||||||||||||||||||| ||||||||||||||| |||| |||||| | ||||||| ||||||| |
|
|
| T |
7154328 |
ataaaggtgaaggtgggtgtaacctcattgtttctttgatcactaacttaaagtaagttagttcatttagatca |
7154255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 365
Target Start/End: Complemental strand, 7141549 - 7141496
Alignment:
| Q |
312 |
aaggtgggtgtaacctcatggtttctttgatcactgacttcaagtaactaagtt |
365 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||| |||||||| |||| |
|
|
| T |
7141549 |
aaggtgggtgtaacctcaatgtttctttgatcactaactttaagtaacttagtt |
7141496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 277
Target Start/End: Complemental strand, 7141710 - 7141587
Alignment:
| Q |
154 |
actatcattaaacctttcaggtataaacttctttgcatcataccaatgtttgggatctcttccaattgcccatgcatttactatcacgctagtctttatt |
253 |
Q |
| |
|
|||||||| |||||| || || |||||| ||| ||||||| ||||| ||| ||||||||||| |||||||| ||||||| | || |||| ||| || |
|
|
| T |
7141710 |
actatcatcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccacgcatttataaagactgtagtatttttt |
7141611 |
T |
|
| Q |
254 |
ggtatttcatatccatctatgttg |
277 |
Q |
| |
|
||||| ||||| |||||||| ||| |
|
|
| T |
7141610 |
ggtatatcatacccatctattttg |
7141587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 240
Target Start/End: Complemental strand, 41465836 - 41465802
Alignment:
| Q |
206 |
ggatctcttccaattgcccatgcatttactatcac |
240 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |
|
|
| T |
41465836 |
ggatctcttccaatcgcccatgcatttactatcac |
41465802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University