View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16645_low_7 (Length: 399)
Name: NF16645_low_7
Description: NF16645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16645_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 15 - 382
Target Start/End: Complemental strand, 6621643 - 6621277
Alignment:
| Q |
15 |
aatatataaatgtcaatactttaaaacgaatgaaatattaaaaatatttaagatcaaaattatgcattttatgagtgagatagtcaattccaattgtgtc |
114 |
Q |
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| T |
6621643 |
aatatataaatgtcaatactttgaaacgaatggagtattaaagagatttaagatcaaaattatgcattttgtgagtgagatagtcaattccaattgtgtc |
6621544 |
T |
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| Q |
115 |
gcattctaatttgttgaatgacccatatttaatttgttgtgcaaaaaataaggaatgtatttaattggggcatgagaaattaagaatgagcgttgattca |
214 |
Q |
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| T |
6621543 |
acatactaatttgttgaatgacccatatttaa-ttgttgtgcaaaaaataaggaatgtatttaattggggcatgagaaattaagaatgagcgttgattca |
6621445 |
T |
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| Q |
215 |
tttagaaaatgtaacggcatgacaaatacgcgttcacgtgcattaattatctctcccacttcactttcatag-ttcacatcacttcacctgtcatattcc |
313 |
Q |
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| T |
6621444 |
tttagaaaatgtaacggcatgac-aatacgcgttcacgtgcattaattatctctcctacttcactttcattgtttcacatcacttcacctgtcatattcc |
6621346 |
T |
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| Q |
314 |
catagaacatactcatcatcaattcttagatagatagaacaagtgagagacatcaaagaacaaagctat |
382 |
Q |
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| T |
6621345 |
catagaacatactcatcatcaattcttagatagatagaacaagtgagagacatcaaagaacaaagctat |
6621277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 82
Target Start/End: Original strand, 42728807 - 42728839
Alignment:
| Q |
50 |
tattaaaaatatttaagatcaaaattatgcatt |
82 |
Q |
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| T |
42728807 |
tattaaagatatttaagatcaaaattatgcatt |
42728839 |
T |
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