View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16645_low_8 (Length: 384)

Name: NF16645_low_8
Description: NF16645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16645_low_8
NF16645_low_8
[»] chr6 (9 HSPs)
chr6 (1-372)||(6631753-6632119)
chr6 (83-288)||(6613153-6613355)
chr6 (224-293)||(22823228-22823297)
chr6 (224-352)||(6608700-6608828)
chr6 (83-163)||(22823355-22823435)
chr6 (108-164)||(32258441-32258497)
chr6 (227-288)||(9145869-9145930)
chr6 (227-288)||(9180502-9180563)
chr6 (99-193)||(31121298-31121392)
[»] chr8 (3 HSPs)
chr8 (99-163)||(596305-596369)
chr8 (107-181)||(33402682-33402756)
chr8 (223-288)||(596177-596242)
[»] chr4 (2 HSPs)
chr4 (99-163)||(17373903-17373967)
chr4 (223-288)||(17373775-17373840)
[»] chr7 (6 HSPs)
chr7 (99-163)||(10973362-10973426)
chr7 (104-163)||(19297668-19297727)
chr7 (122-163)||(10999787-10999828)
chr7 (99-164)||(11041268-11041333)
chr7 (120-160)||(5922387-5922427)
chr7 (120-160)||(5931518-5931558)
[»] chr2 (1 HSPs)
chr2 (120-156)||(38407063-38407099)


Alignment Details
Target: chr6 (Bit Score: 344; Significance: 0; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 6631753 - 6632119
Alignment:
Q  1 tcataatcatactacttgcatttgaggctagtgatgtgatactatagctatatcatttgctgaggtaaaagttactattgttaataaggtattggctaca 100  Q
    ||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  6631753 tcataatcatactacttgcatttgaggctagtga-----tactatagctatatcatttgctgaggtaaaagttactattgttaataaggtattggctcca 6631847  T
Q  101 actcccacaaacatcacttttcattgtaaatctagagatgatgatcttggatttcacacactcgtgtctgaaggaagttacgcgtttacattctcgccga 200  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6631848 actcccacaaacatcacttttcattgtaaatctagagatgacgatcttggatttcacacactcgtgtctgaaggaagttacgcgtttacattctcgccga 6631947  T
Q  201 attttactccatggtttagtaaaacgttattcttctgcagttttacatggcctggaaaccctcaacttcattatcttgacatctacgatcaagttcgtga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6631948 attttactccatggtttagtaaaacgttattcttctgcagttttacatggcctggaaaccctcaacttcattatcttgacatctacgatcaagttcgtga 6632047  T
Q  301 caactgctatcgttgcagatggacaataaacaaagatggaggttgtttgaacacacataagtgttataagtg 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6632048 caactgctatcgttgcagatggacaataaacaaagatggaggttgtttgaacacacataagtgttataagtg 6632119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 83 - 288
Target Start/End: Original strand, 6613153 - 6613355
Alignment:
Q  83 aataaggtattggctacaactcccacaaacatcacttttcattgtaaatctagagatgatgatcttggatttcacacactcgtgtctgaaggaagttacg 182  Q
    ||||||||||||||| |||||||| || |||||||| ||||||| ||||||| |||||| |||||||||  |||||||||| || ||| || ||| || |    
T  6613153 aataaggtattggctccaactcccgcagacatcactgttcattgcaaatctaaagatgacgatcttggagatcacacactcatgcctggagaaagctatg 6613252  T
Q  183 cgtttacattctcgccgaattttactccatggtttagtaaaacgttattcttctgcagttttacatggcctggaaaccctcaacttcattatcttgacat 282  Q
     |||| |||||   || |    |  ||||   ||||  || || ||||||||||||||||||||||||||||||||||| || |  ||||||||||||||    
T  6613253 tgttttcattcaaaccaacacatcttcca---tttaaaaatactttattcttctgcagttttacatggcctggaaacccgcatcgacattatcttgacat 6613349  T
Q  283 ctacga 288  Q
     |||||    
T  6613350 ttacga 6613355  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 293
Target Start/End: Complemental strand, 22823297 - 22823228
Alignment:
Q  224 acgttattcttctgcagttttacatggcctggaaaccctcaacttcattatcttgacatctacgatcaag 293  Q
    ||||||||||||||  |||||||||||||||||||||| || |  |||||||||||||| ||||| ||||    
T  22823297 acgttattcttctgtggttttacatggcctggaaacccacatcgacattatcttgacatttacgaccaag 22823228  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 224 - 352
Target Start/End: Original strand, 6608700 - 6608828
Alignment:
Q  224 acgttattcttctgcagttttacatggcctggaaaccctcaacttcattatcttgacatctacgatcaagttcgtgacaactgctatcgttgcagatgga 323  Q
    |||||||||| |||||||||||||||||||  |||||| ||  || ||||||||||||| ||||| |||   ||| |||| ||| ||| ||||| ||||     
T  6608700 acgttattctcctgcagttttacatggcctcaaaacccccatgtttattatcttgacatttacgaccaaaaccgtcacaattgcaatcattgcacatggg 6608799  T
Q  324 caataaacaaagatggaggttgtttgaac 352  Q
     |||||||  | ||||||| |||||||||    
T  6608800 gaataaacgtaaatggaggctgtttgaac 6608828  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 83 - 163
Target Start/End: Complemental strand, 22823435 - 22823355
Alignment:
Q  83 aataaggtattggctacaactcccacaaacatcacttttcattgtaaatctagagatgatgatcttggatttcacacactc 163  Q
    |||||||||||| || ||||||| |||||||||||| ||| ||| ||||||| ||||||  ||||||||  ||||||||||    
T  22823435 aataaggtattgactccaactcctacaaacatcactgttcgttgcaaatctaaagatgacaatcttggagatcacacactc 22823355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 108 - 164
Target Start/End: Complemental strand, 32258497 - 32258441
Alignment:
Q  108 caaacatcacttttcattgtaaatctagagatgatgatcttggatttcacacactcg 164  Q
    |||| |||||| ||||||| ||||||| |||||| ||||||||||||||||||||||    
T  32258497 caaatatcactcttcattgcaaatctaaagatgaagatcttggatttcacacactcg 32258441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 227 - 288
Target Start/End: Complemental strand, 9145930 - 9145869
Alignment:
Q  227 ttattcttctgcagttttacatggcctggaaaccctcaacttcattatcttgacatctacga 288  Q
    |||||||||||| ||||||||||||||| ||||||  | | ||||||||||||||| |||||    
T  9145930 ttattcttctgcggttttacatggcctgaaaacccctatcgtcattatcttgacatttacga 9145869  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 227 - 288
Target Start/End: Original strand, 9180502 - 9180563
Alignment:
Q  227 ttattcttctgcagttttacatggcctggaaaccctcaacttcattatcttgacatctacga 288  Q
    |||||||||||| ||||||||||||||| ||||||  | | ||||||||||||||| |||||    
T  9180502 ttattcttctgcggttttacatggcctgaaaacccctatcgtcattatcttgacatttacga 9180563  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 193
Target Start/End: Original strand, 31121298 - 31121392
Alignment:
Q  99 caactcccacaaacatcacttttcattgtaaatctagagatgatgatcttggatttcacacactcgtgtctgaaggaagttacgcgtttacattc 193  Q
    ||||||| |||| ||| ||| ||||||| ||||| | | ||||||||||||||||||||||| || ||| || |  |||||||| |||| |||||    
T  31121298 caactccaacaaccatgactgttcattgcaaatccaaaaatgatgatcttggatttcacacaatcatgtttggacaaagttacgtgttttcattc 31121392  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 596369 - 596305
Alignment:
Q  99 caactcccacaaacatcacttttcattgtaaatctagagatgatgatcttggatttcacacactc 163  Q
    ||||||||| || |||||||||| |||| ||||| | |||||||||||||||| |||||||||||    
T  596369 caactcccaaaaccatcacttttaattgcaaatccaaagatgatgatcttggagttcacacactc 596305  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 181
Target Start/End: Complemental strand, 33402756 - 33402682
Alignment:
Q  107 acaaacatcacttttcattgtaaatctagagatgatgatcttggatttcacacactcgtgtctgaaggaagttac 181  Q
    ||||| |||||||||||||| ||||| | | | ||||||||||||||||||||||||  || || ||||||||||    
T  33402756 acaaatatcacttttcattgcaaatcaaaaaacgatgatcttggatttcacacactcacgtttggaggaagttac 33402682  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 596242 - 596177
Alignment:
Q  223 aacgttattcttctgcagttttacatggcctggaaaccctcaacttcattatcttgacatctacga 288  Q
    |||| |||||| ||||||||||||||||| ||| ||||| || | ||||||| ||||||| |||||    
T  596242 aacggtattctcctgcagttttacatggcttggtaacccccatcgtcattattttgacatttacga 596177  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 17373967 - 17373903
Alignment:
Q  99 caactcccacaaacatcacttttcattgtaaatctagagatgatgatcttggatttcacacactc 163  Q
    ||||||||| || |||||||||| |||| ||||||| |||||||||||||||| |||| ||||||    
T  17373967 caactcccaaaaccatcacttttaattgcaaatctaaagatgatgatcttggagttcatacactc 17373903  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 17373840 - 17373775
Alignment:
Q  223 aacgttattcttctgcagttttacatggcctggaaaccctcaacttcattatcttgacatctacga 288  Q
    |||| |||||| ||||||||||||||||| ||| ||||| || | ||||||| ||||||| |||||    
T  17373840 aacggtattctcctgcagttttacatggcttggtaacccccatcgtcattattttgacatttacga 17373775  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 163
Target Start/End: Original strand, 10973362 - 10973426
Alignment:
Q  99 caactcccacaaacatcacttttcattgtaaatctagagatgatgatcttggatttcacacactc 163  Q
    |||||||||||||  | || || ||||| ||||||| |||||| |||||||||||||||||||||    
T  10973362 caactcccacaaatcttacattacattgcaaatctaaagatgacgatcttggatttcacacactc 10973426  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 104 - 163
Target Start/End: Original strand, 19297668 - 19297727
Alignment:
Q  104 cccacaaacatcacttttcattgtaaatctagagatgatgatcttggatttcacacactc 163  Q
    |||||||| |||||| ||||||||||||| | |||||| ||| | |||||||||||||||    
T  19297668 cccacaaatatcactcttcattgtaaatcgaaagatgacgatttaggatttcacacactc 19297727  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 163
Target Start/End: Original strand, 10999787 - 10999828
Alignment:
Q  122 cattgtaaatctagagatgatgatcttggatttcacacactc 163  Q
    ||||||||||| | |||||| |||||||||||||||||||||    
T  10999787 cattgtaaatccaaagatgacgatcttggatttcacacactc 10999828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 164
Target Start/End: Complemental strand, 11041333 - 11041268
Alignment:
Q  99 caactcccacaaacatcacttttcattgtaaatctagagatgatgatcttggatttcacacactcg 164  Q
    ||||||||||| |  |||| || ||||| ||||| | |||||||||||||||||||||| ||||||    
T  11041333 caactcccacagaattcacattacattgcaaatcaaaagatgatgatcttggatttcactcactcg 11041268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 160
Target Start/End: Complemental strand, 5922427 - 5922387
Alignment:
Q  120 ttcattgtaaatctagagatgatgatcttggatttcacaca 160  Q
    ||||||| ||||| | |||||||||||||||||||||||||    
T  5922427 ttcattgcaaatcaaaagatgatgatcttggatttcacaca 5922387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 160
Target Start/End: Complemental strand, 5931558 - 5931518
Alignment:
Q  120 ttcattgtaaatctagagatgatgatcttggatttcacaca 160  Q
    ||||||| ||||| | |||||||||||||||||||||||||    
T  5931558 ttcattgcaaatcaaaagatgatgatcttggatttcacaca 5931518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 38407063 - 38407099
Alignment:
Q  120 ttcattgtaaatctagagatgatgatcttggatttca 156  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  38407063 ttcattgtaaatctaaagatgatgatcttggagttca 38407099  T

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