View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16645_low_9 (Length: 350)
Name: NF16645_low_9
Description: NF16645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16645_low_9 |
 | |
|
| [»] scaffold0257 (1 HSPs) |
| | |
|
| [»] scaffold0072 (1 HSPs) |
| | |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 22 - 334
Target Start/End: Original strand, 24064731 - 24065043
Alignment:
| Q |
22 |
tgagttctaacaaagcatcaatggcgttttcattgaaaacgagagtttgtgcaatttgaggtgaaacataaatgattatccatgattgaagcaaatgatt |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24064731 |
tgagttctaacaaagcatcaatggcgttttcattgaaaacgagagtttgtgcaatttgaggtgaaacataaatgattatccatgattgaagcaaatgatt |
24064830 |
T |
|
| Q |
122 |
gcaagttcccatgcattgcgattcaaatcatcttcatcatgaatatccatggatccagcaatgaacttcaatttattttttgcaccaaaagctcgaatca |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24064831 |
gcaagttcccatgcattgcgattcaaatcatcttcatcatgaatatccatggatccagcaatgaacttcaatttattttttgcaccaaaagctcgaatca |
24064930 |
T |
|
| Q |
222 |
tggagcaactccatgcgaggtagtttgatcaatccaatggaggagcaacaataacataattatgtccttcacttggatgaacgtagaaaacagattcagt |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24064931 |
tggagcaactccatgcgaggtagtttgatcaatccaatggaggagaaacaataacataattatgtccttcacttggatgaacgtagaaaacagattcagt |
24065030 |
T |
|
| Q |
322 |
attgggttcattt |
334 |
Q |
| |
|
|| ||||| |||| |
|
|
| T |
24065031 |
atcgggttgattt |
24065043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 323
Target Start/End: Complemental strand, 8848223 - 8847919
Alignment:
| Q |
19 |
ctttgagttctaacaaagcatcaatggcgttttcattgaaaacgagagtttgtgcaatttgaggtgaaacataaatgattatccatgattgaagcaaatg |
118 |
Q |
| |
|
||||||| |||||| ||||||||||| ||||||||| ||||| || ||||||||||| ||||| | ||| || |||| |||||||| |||| | ||| |
|
|
| T |
8848223 |
ctttgagatctaaccaagcatcaatgacgttttcatgaaaaaccagtgtttgtgcaatatgaggagtaactgaattgataatccatgactgaattagatg |
8848124 |
T |
|
| Q |
119 |
attgcaa-gttcccatgcattgcgattcaaatcatcttcatcatgaatatccatggatccagcaatgaacttcaatttattttttgcaccaaaagctcga |
217 |
Q |
| |
|
||||||| ||||||| || || |||||||||| || ||||| |||| |||||||||||| ||| ||||||||||| || || || |||||||| ||| |
|
|
| T |
8848123 |
attgcaatgttcccaggcgtta-gattcaaatcttcctcatctggaatttccatggatccatcaacaaacttcaatttgttcttcgcgccaaaagcgcga |
8848025 |
T |
|
| Q |
218 |
atcatggagcaactccatgcgaggtagtttgatcaatccaatggaggagcaacaataacataattatgtccttcacttggatgaacgtagaaaacagatt |
317 |
Q |
| |
|
|||||||| | |||||||||||||||||| | | |||||| | |||| ||||| ||| |||| |||||||||||||||| ||||| ||||| |||| |
|
|
| T |
8848024 |
atcatggaacgactccatgcgaggtagttaaaaccatccaagagtggagtaacaagaacggaattcggtccttcacttggatgcacgtaaaaaactgatt |
8847925 |
T |
|
| Q |
318 |
cagtat |
323 |
Q |
| |
|
|||||| |
|
|
| T |
8847924 |
cagtat |
8847919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 34 - 258
Target Start/End: Complemental strand, 19651962 - 19651737
Alignment:
| Q |
34 |
aagcatcaatggcgttttcattgaaaacgagagtttgtgcaatttgaggtgaaacataaatgattatccatgattgaagcaaatgattgcaa-gttccca |
132 |
Q |
| |
|
|||| ||||||||| |||||| ||||| | |||||| |||||||||||||||||| | | || ||||||||||||| | |||||| || ||||||| |
|
|
| T |
19651962 |
aagcttcaatggcggtttcatgaaaaaccaaagtttgagcaatttgaggtgaaacagagttaataatccatgattgaataagatgatttcatcgttccca |
19651863 |
T |
|
| Q |
133 |
tgcattgcgattcaaatcatcttcatcatgaatatccatggatccagcaatgaacttcaatttattttttgcaccaaaagctcgaatcatggagcaactc |
232 |
Q |
| |
|
||| | |||||||||||||| |||||| ||| ||||||||| ||| ||| ||||||||||| || || || || ||||||||||||||||| | | || |
|
|
| T |
19651862 |
agcacttcgattcaaatcatcctcatcaggaacatccatggaaccatcaacaaacttcaatttgttcttcgcgcccaaagctcgaatcatggaacgattc |
19651763 |
T |
|
| Q |
233 |
catgcgaggtagtttgatcaatccaa |
258 |
Q |
| |
|
||||||||||| || |||| |||||| |
|
|
| T |
19651762 |
catgcgaggtaattggatccatccaa |
19651737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 141; Significance: 7e-74; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 20 - 323
Target Start/End: Complemental strand, 24675004 - 24674700
Alignment:
| Q |
20 |
tttgagttctaacaaagcatcaatggcgttttcattgaaaacgagagtttgtgcaatttgaggtgaaacataaatgattatccatgattgaagcaaatga |
119 |
Q |
| |
|
|||||| |||||| |||||||||| |||||||||| |||||| | |||||||||||||||| ||||||| || |||||||||||||||||| ||||||| |
|
|
| T |
24675004 |
tttgagatctaaccaagcatcaattgcgttttcatggaaaactaatgtttgtgcaatttgagttgaaacagaattgattatccatgattgaatcaaatga |
24674905 |
T |
|
| Q |
120 |
ttgcaa-gttcccatgcattgcgattcaaatcatcttcatcatgaatatccatggatccagcaatgaacttcaatttattttttgcaccaaaagctcgaa |
218 |
Q |
| |
|
|||||| |||||| ||||| | |||||||| | ||||| | |||| ||||||||| || |||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
24674904 |
ttgcaacgttcccgcacattggggttcaaatctttttcattaggaatctccatggatacatcaatgaacttcattttatttttcatgccaaaagctcgaa |
24674805 |
T |
|
| Q |
219 |
tcatggagcaactccatgcgaggtagtttgatcaatccaatggaggagcaacaataacataattatgtccttcacttggatgaacgtagaaaacagattc |
318 |
Q |
| |
|
|||||| | |||||| ||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
24674804 |
ccatggaacgcctccatccgaggtagtttgatccatccaatggaggagcaacaataacagaattagatccttcacttggatgaacgtagaaaatggattc |
24674705 |
T |
|
| Q |
319 |
agtat |
323 |
Q |
| |
|
||||| |
|
|
| T |
24674704 |
agtat |
24674700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 36 - 323
Target Start/End: Complemental strand, 28736867 - 28736579
Alignment:
| Q |
36 |
gcatcaatggcgttttcattgaaaacgagagtttgtgcaatttgaggtgaaacataaatgattatccatgattgaagcaaatgattgcaa-gttcccatg |
134 |
Q |
| |
|
||||||||||||||||||| ||||| || ||||||||||||||||| | | | || |||| ||||| || ||||| | ||| || ||| ||||||| | |
|
|
| T |
28736867 |
gcatcaatggcgttttcatgaaaaactagggtttgtgcaatttgaggagtagctgaattgatgatccaagactgaaggagatggttacaacgttcccagg |
28736768 |
T |
|
| Q |
135 |
cattgcgattcaaatcatcttcatcatgaatatccatggatccagcaatgaacttcaatttattttttgcaccaaaagctcgaatcatggagcaactcca |
234 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||| |||| | ||||||| |||||||| ||||| || |||||||||||||||||||| | |||||| |
|
|
| T |
28736767 |
cattgcgattcaaatcatcttcatctggaatctccatagatcaatcaatgaatttcaatttgtttttcgcgccaaaagctcgaatcatggaacgactcca |
28736668 |
T |
|
| Q |
235 |
tgcgaggtagtttgatcaatccaatggaggagcaacaataacataattatgtccttcacttggatgaacgtagaaaacagattcagtat |
323 |
Q |
| |
|
||||||||| || |||| ||||||||||||||| |||| || |||| ||||||| ||||||||||||||||| || |||||||||| |
|
|
| T |
28736667 |
tgcgaggtaattagatccatccaatggaggagctacaagcactgaattcggtccttctcttggatgaacgtagaacacggattcagtat |
28736579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 27 - 246
Target Start/End: Original strand, 4647801 - 4648021
Alignment:
| Q |
27 |
tctaacaaagcatcaatggcgttttcattgaaaacgagagtttgtgcaatttgaggtgaaacataaatgattatccatgattgaagcaaatgattgcaa- |
125 |
Q |
| |
|
|||||| |||||||||||| |||||||| |||||| ||||||||| |||||||||| | ||| || |||| |||||||| |||| | ||||||||| |
|
|
| T |
4647801 |
tctaaccaagcatcaatggtgttttcatggaaaaccagagtttgttcaatttgaggagtaactgaattgataatccatgactgaattaggtgattgcaat |
4647900 |
T |
|
| Q |
126 |
gttcccatgcattgcgattcaaatcatcttcatcatgaatatccatggatccagcaatgaacttcaatttattttttgcaccaaaagctcgaatcatgga |
225 |
Q |
| |
|
||||||| ||| ||||||| ||||| || ||||| ||| |||||||||||| | | ||||||||||| || || ||||||||||| |||||||||| |
|
|
| T |
4647901 |
gttcccaggcactgcgattgaaatcttcctcatctggaagttccatggatccatcgacaaacttcaatttgttcttcgcaccaaaagcgagaatcatgga |
4648000 |
T |
|
| Q |
226 |
gcaactccatgcgaggtagtt |
246 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
4648001 |
acgactccatgcgaggtagtt |
4648021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 34 - 321
Target Start/End: Original strand, 21810852 - 21811140
Alignment:
| Q |
34 |
aagcatcaatggcgttttcattgaaaacgagagtttgtgcaatttgaggtgaaacataaatgattatccatgattgaagcaaatgattgcaa-gttccca |
132 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| | |||| ||||| ||||||| | |||||||||| ||||||| |
|
|
| T |
21810852 |
aagcatcaatggcgttttcatggaaaacgagagtttgagcaatttgaggtgaaacagagttgataatccaggattgaacaagatgattgcaacgttccca |
21810951 |
T |
|
| Q |
133 |
tgcattgcgattcaaatcatcttcatcatgaatatccatggatccagcaatgaacttcaatttattttttgcaccaaaagctcgaatcatggagcaactc |
232 |
Q |
| |
|
|| |||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||| || || || ||||| || ||||||||||| | |||| |
|
|
| T |
21810952 |
agcgttgcgattcaaatcatcttcatcaggaatctccatggatccatcaatgaacttcaatttgttcttcgcgccaaacgcacgaatcatggaacgactc |
21811051 |
T |
|
| Q |
233 |
catgcgaggtagtttgatcaatccaatggaggagcaacaataacataattatgtccttcacttggatgaacgtagaaaacagattcagt |
321 |
Q |
| |
|
|| |||||||| || |||| |||||||||||| | || || |||| |||| ||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
21811052 |
caagcgaggtaattcgatccatccaatggaggtgaaataagaacagaattcggtccttcacttggatgaacatagaaaacggattcagt |
21811140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 36 - 319
Target Start/End: Original strand, 27521735 - 27522019
Alignment:
| Q |
36 |
gcatcaatggcgttttcattgaaaacgagagtttgtgcaatttgaggtgaaacataaatgattatccatgattgaagcaaatgattgcaa-gttcccatg |
134 |
Q |
| |
|
||||||||||||||||||| || || |||||||| |||||||| |||||||| || |||||||||||||||||| | ||||||||| ||||||||| |
|
|
| T |
27521735 |
gcatcaatggcgttttcatgaaacaccagagtttgcgcaatttgcggtgaaaccgaattgattatccatgattgaataagatgattgcatcgttcccatg |
27521834 |
T |
|
| Q |
135 |
cattgcgattcaaatcatcttcatcatgaatatccatggatccagcaatgaacttcaatttattttttgcaccaaaagctcgaatcatggagcaactcca |
234 |
Q |
| |
|
|| | ||||| | || ||||||||| |||| ||||| |||||| ||||||| |||||||| ||||| || |||||||||||||||||||| | |||||| |
|
|
| T |
27521835 |
cacttcgatttaggtcgtcttcatcaggaatctccatagatccatcaatgaatttcaatttgtttttcgcgccaaaagctcgaatcatggaacgactcca |
27521934 |
T |
|
| Q |
235 |
tgcgaggtagtttgatcaatccaatggaggagcaacaataacataattatgtccttcacttggatgaacgtagaaaacagattca |
319 |
Q |
| |
|
||||||||| ||||||| |||||| |||||||||||||||||| |||| | ||||| |||||||||| |||||||| |||||| |
|
|
| T |
27521935 |
tgcgaggtaatttgatccatccaaaggaggagcaacaataacagaatttggaccttcgattggatgaacatagaaaacggattca |
27522019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 34 - 321
Target Start/End: Complemental strand, 19698543 - 19698255
Alignment:
| Q |
34 |
aagcatcaatggcgttttcattgaaaacgagagtttgtgcaatttgaggtgaaacataaatgattatccatgattgaagcaaatgattgcaag-ttccca |
132 |
Q |
| |
|
||||||||||||||||||||| |||||| | ||||| | ||| |||||||||||| | | || ||||| ||||||| | |||||||| |||||| |
|
|
| T |
19698543 |
aagcatcaatggcgttttcatggaaaactatggtttgagtaatctgaggtgaaacagagttaataatccacgattgaatgaggtgattgcatcattccca |
19698444 |
T |
|
| Q |
133 |
tgcattgcgattcaaatcatcttcatcatgaatatccatggatccagcaatgaacttcaatttattttttgcaccaaaagctcgaatcatggagcaactc |
232 |
Q |
| |
|
| ||| ||||||||||| ||||||| |||| ||||| |||||| ||| || |||||||| ||||| || |||||||||||||||||||| | |||| |
|
|
| T |
19698443 |
agtattacgattcaaatcgtcttcatttggaatctccatagatccatcaacaaatttcaatttgtttttcgcgccaaaagctcgaatcatggaacgactc |
19698344 |
T |
|
| Q |
233 |
catgcgaggtagtttgatcaatccaatggaggagcaacaataacataattatgtccttcacttggatgaacgtagaaaacagattcagt |
321 |
Q |
| |
|
|||||||||||||| | || |||||||||||| | ||| | |||| | || || ||||||||||||||| |||||| ||||||||||| |
|
|
| T |
19698343 |
catgcgaggtagttcgttccatccaatggaggtgtaaccaaaacagagtttggttcttcacttggatgaatgtagaagacagattcagt |
19698255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 34 - 321
Target Start/End: Complemental strand, 16985099 - 16984811
Alignment:
| Q |
34 |
aagcatcaatggcgttttcattgaaaacgagagtttgtgcaatttgaggtgaaacataaatgattatccatgattgaagcaaatgattgcaa-gttccca |
132 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |||||||||||||||||| | |||| ||||| ||||||| | |||||||||| ||||||| |
|
|
| T |
16985099 |
aagcatcaatggcgttttcatgaaaaacgagagtttgagcaatttgaggtgaaacagagttgataatccaggattgaacaagatgattgcaacgttccca |
16985000 |
T |
|
| Q |
133 |
tgcattgcgattcaaatcatcttcatcatgaatatccatggatccagcaatgaacttcaatttattttttgcaccaaaagctcgaatcatggagcaactc |
232 |
Q |
| |
|
|| ||||| |||||||||||||||||| |||| |||||||||||| |||||||||||||||| || || || ||||| || |||||||| || | |||| |
|
|
| T |
16984999 |
agcgttgcggttcaaatcatcttcatcaggaatctccatggatccatcaatgaacttcaatttgttcttcgcgccaaacgcacgaatcatagaacgactc |
16984900 |
T |
|
| Q |
233 |
catgcgaggtagtttgatcaatccaatggaggagcaacaataacataattatgtccttcacttggatgaacgtagaaaacagattcagt |
321 |
Q |
| |
|
|| |||||||| || |||| |||||||||||| | || || |||| |||| ||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
16984899 |
caagcgaggtaattcgatccatccaatggaggtgaaataagaacagaatttggtccttcacttggatgaacatagaaaacggattcagt |
16984811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 23970316 - 23970279
Alignment:
| Q |
127 |
ttcccatgcattgcgattcaaatcatcttcatcatgaa |
164 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
23970316 |
ttcccatgcaatccgattcaaatcatcttcatcatgaa |
23970279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 34 - 266
Target Start/End: Complemental strand, 15940129 - 15939896
Alignment:
| Q |
34 |
aagcatcaatggcgttttcattgaaaacgagagtttgtgcaatttgaggtgaaacataaatgattatccatgattgaagcaaatgattgcaa-gttccca |
132 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| || |||||||||| ||||||| | |||||||||| ||||||| |
|
|
| T |
15940129 |
aagcatcaatggcgttttcatgaaaaacaagagtttgtgcaatttgaggtgaaacaaaattgattatccaagattgaattagatgattgcaacgttccca |
15940030 |
T |
|
| Q |
133 |
tgcattgcgattcaaatcatcttcatcatgaatatccatggatccagcaatgaacttcaatttattttttgcaccaaaagctcgaatcatggagcaactc |
232 |
Q |
| |
|
||||||||||||||| |||||||||||| ||| |||| ||||||| ||||||| ||||| |||||| | || ||||||||| |||||||||||| |||| |
|
|
| T |
15940029 |
tgcattgcgattcaagtcatcttcatcagaaatctccaaggatccatcaatgaatttcaacttatttctcgcgccaaaagcttgaatcatggagcgactc |
15939930 |
T |
|
| Q |
233 |
catgcgaggtagtttgatcaatccaatggaggag |
266 |
Q |
| |
|
|||||||||| ||| |||| ||||| ||||||| |
|
|
| T |
15939929 |
catgcgaggttgttcgatccatccagaggaggag |
15939896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 111; Significance: 6e-56; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 36 - 321
Target Start/End: Complemental strand, 23955682 - 23955396
Alignment:
| Q |
36 |
gcatcaatggcgttttcattgaaaacgagagtttgtgcaatttgaggtgaaacataaatgattatccatgattgaagcaaatgattgcaa-gttcccatg |
134 |
Q |
| |
|
|||||||||||||| |||| || || |||||||| |||||||| |||||||| || ||||||||||||||| || | ||||||||| ||||||||| |
|
|
| T |
23955682 |
gcatcaatggcgttgtcatgaaacaccagagtttgcgcaatttgcggtgaaaccgaattgattatccatgatttaataagatgattgcatcgttcccatg |
23955583 |
T |
|
| Q |
135 |
cattgcgattcaaatcatcttcatcatgaatatccatggatccagcaatgaacttcaatttattttttgcaccaaaagctcgaatcatggagcaactcca |
234 |
Q |
| |
|
| | ||||| | |||||||||| | |||| ||||| |||||| ||||||| |||||||| ||||| || |||||||||||||||||||| | |||||| |
|
|
| T |
23955582 |
aacttcgatttaggtcatcttcataaggaatctccatagatccatcaatgaatttcaatttgtttttcgcgccaaaagctcgaatcatggaacgactcca |
23955483 |
T |
|
| Q |
235 |
tgcgaggtagtttgatcaatccaatggaggagcaacaataacataattatgtccttcacttggatgaacgtagaaaacagattcagt |
321 |
Q |
| |
|
||||||||| ||||||| |||||| |||||||||||||||||| |||| | ||||| ||||||||||| |||||||| |||||||| |
|
|
| T |
23955482 |
tgcgaggtaatttgatccatccaaaggaggagcaacaataacagaatttggaccttcgcttggatgaacatagaaaacggattcagt |
23955396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 37 - 323
Target Start/End: Original strand, 26468544 - 26468831
Alignment:
| Q |
37 |
catcaatggcgttttcattgaaaacgagagtttgtgcaatttgaggtgaaacataaatgattatccatgattgaagcaaatgattgcaa-gttcccatgc |
135 |
Q |
| |
|
|||||| ||||||||||| |||||| || ||||| ||||| ||||||||||| | |||| ||||| ||||||| | |||||||| ||||||| || |
|
|
| T |
26468544 |
catcaacggcgttttcatggaaaactagggtttgagcaatcggaggtgaaacagagttgataatccacgattgaattaggtgattgcagcgttcccaagc |
26468643 |
T |
|
| Q |
136 |
attgcgattcaaatcatcttcatcatgaatatccatggatccagcaatgaacttcaatttattttttgcaccaaaagctcgaatcatggagcaactccat |
235 |
Q |
| |
|
| |||||||||||||||||||| |||| ||||| ||||| ||| || |||||||| |||||| | ||||||||||||||||||||| ||||||| |
|
|
| T |
26468644 |
gctacgattcaaatcatcttcatctggaatctccatatatccatcaacaaatttcaatttgttttttacgacaaaagctcgaatcatggagcgactccat |
26468743 |
T |
|
| Q |
236 |
gcgaggtagtttgatcaatccaatggaggagcaacaataacataattatgtccttcacttggatgaacgtagaaaacagattcagtat |
323 |
Q |
| |
|
|||||||| || | || ||||||| |||| | ||| | |||| |||| ||||||| |||||||||||||| || || |||||||||| |
|
|
| T |
26468744 |
gcgaggtaattcgttccatccaatagaggtgtaaccaaaacagaattcggtccttcgcttggatgaacgtaaaagaccgattcagtat |
26468831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 20 - 272
Target Start/End: Complemental strand, 30582779 - 30582526
Alignment:
| Q |
20 |
tttgagttctaacaaagcatcaatggcgttttcattgaaaacgagagtttgtgcaatttgaggtgaaacataaatgattatccatgattgaagcaaatga |
119 |
Q |
| |
|
|||||| |||||| |||||||||||||| ||||| ||||| || ||||| |||||||||| |||||| || |||| ||||| || |||| | |||| |
|
|
| T |
30582779 |
tttgagatctaaccaagcatcaatggcggattcatgaaaaaccagtgtttgagcaatttgagatgaaactgaattgatgatccaggactgaattagatga |
30582680 |
T |
|
| Q |
120 |
ttgcaa-gttcccatgcattgcgattcaaatcatcttcatcatgaatatccatggatccagcaatgaacttcaatttattttttgcaccaaaagctcgaa |
218 |
Q |
| |
|
||| | ||||||| ||| | ||||||| ||||| ||||||| |||| ||||| || ||| |||| || |||||||| ||||| | |||||||| |||| |
|
|
| T |
30582679 |
ttgtatcgttcccacgcactacgattcagatcattttcatcaggaatctccatcgaaccatcaataaatttcaatttgtttttcacgccaaaagcacgaa |
30582580 |
T |
|
| Q |
219 |
tcatggagcaactccatgcgaggtagtttgatcaatccaatggaggagcaacaa |
272 |
Q |
| |
|
|||| || |||||||||||| ||||| |||| |||||| |||||| ||||| |
|
|
| T |
30582579 |
tcattgaatgactccatgcgagatagttggatccatccaagagaggagtaacaa |
30582526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 34 - 321
Target Start/End: Original strand, 20853797 - 20854085
Alignment:
| Q |
34 |
aagcatcaatggcgttttcattgaaaacgagagtttgtgcaatttgaggtgaaacataaatgattatccatgattgaagcaaatgattgcaa-gttccca |
132 |
Q |
| |
|
|||||||| |||||||||||| || || ||||||||||||||||| |||||| || |||||||||||||||||| | ||||||||| | ||||| |
|
|
| T |
20853797 |
aagcatcagtggcgttttcatgaaatacaagagtttgtgcaatttgcagtgaaatcgaattgattatccatgattgaataagatgattgcatcgctccca |
20853896 |
T |
|
| Q |
133 |
tgcattgcgattcaaatcatcttcatcatgaatatccatggatccagcaatgaacttcaatttattttttgcaccaaaagctcgaatcatggagcaactc |
232 |
Q |
| |
|
|||||| |||||||| |||||||||||| |||| |||||||||||| ||||||| |||||||| || || || |||||| ||||||||||||| | |||| |
|
|
| T |
20853897 |
tgcatttcgattcaagtcatcttcatcaggaatttccatggatccatcaatgaatttcaatttgttcttcgcgccaaaatctcgaatcatggaacgactc |
20853996 |
T |
|
| Q |
233 |
catgcgaggtagtttgatcaatccaatggaggagcaacaataacataattatgtccttcacttggatgaacgtagaaaacagattcagt |
321 |
Q |
| |
|
||||||| || || || | ||||| ||||||||||||| |||| |||| | |||||||| | |||||||||||||||||||||||| |
|
|
| T |
20853997 |
catgcgatataattcgaaccatccagaggaggagcaacaacaacaaaatttggaccttcactcgaatgaacgtagaaaacagattcagt |
20854085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 36 - 323
Target Start/End: Complemental strand, 34065285 - 34064997
Alignment:
| Q |
36 |
gcatcaatggcgttttcattgaaaacgagagtttgtgcaatttgaggtgaaacataaatgattatccatgattgaagcaaatgattgcaa-gttcccatg |
134 |
Q |
| |
|
||||||||||||||||||| ||||| || ||||| ||||||||||| | ||| || |||| ||||| || ||||| | |||||| ||| ||||| | | |
|
|
| T |
34065285 |
gcatcaatggcgttttcatgaaaaactagggtttgagcaatttgaggagtaactgaattgatgatccaagactgaaggagatgattacaatgttcctagg |
34065186 |
T |
|
| Q |
135 |
cattgcgattcaaatcatcttcatcatgaatatccatggatccagcaatgaacttcaatttattttttgcaccaaaagctcgaatcatggagcaactcca |
234 |
Q |
| |
|
| ||||||||||||||||||||||| |||| ||||| |||||| |||| || |||||||| ||||| ||||||||||||||||||||||| | | |||| |
|
|
| T |
34065185 |
cgttgcgattcaaatcatcttcatctggaatctccatagatccatcaataaatttcaatttgtttttcgcaccaaaagctcgaatcatggaacgattcca |
34065086 |
T |
|
| Q |
235 |
tgcgaggtagtttgatcaatccaatggaggagcaacaataacataattatgtccttcacttggatgaacgtagaaaacagattcagtat |
323 |
Q |
| |
|
||||||||| || |||| |||||||||| ||| |||| || |||| ||||||| ||||||||||||||||| || |||||||||| |
|
|
| T |
34065085 |
tgcgaggtaattggatccatccaatggaagagttacaaacactgaattcggtccttcgcttggatgaacgtagaacacggattcagtat |
34064997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 34 - 258
Target Start/End: Complemental strand, 14611856 - 14611631
Alignment:
| Q |
34 |
aagcatcaatggcgttttcattgaaaacgagagtttgtgcaatttgaggtgaaacataaatgattatccatgattgaagcaaatgattgcaa-gttccca |
132 |
Q |
| |
|
|||| ||||||||| |||||| ||||| | ||||| |||||||| ||||||||| | | || ||||||||||||| | |||||| || ||||||| |
|
|
| T |
14611856 |
aagcttcaatggcggtttcataaaaaaccaatgtttgagcaatttgtggtgaaacagagttaataatccatgattgaataagatgattacatcgttccca |
14611757 |
T |
|
| Q |
133 |
tgcattgcgattcaaatcatcttcatcatgaatatccatggatccagcaatgaacttcaatttattttttgcaccaaaagctcgaatcatggagcaactc |
232 |
Q |
| |
|
|| | |||||||||||||| |||||| ||| |||||||| ||| ||| ||||||||||| || || || |||||||||||||||||||||| |||| |
|
|
| T |
14611756 |
agcgcttcgattcaaatcatcctcatcaagaacttccatggaaccatcaacaaacttcaatttgttcttcgcgccaaaagctcgaatcatggagcgactc |
14611657 |
T |
|
| Q |
233 |
catgcgaggtagtttgatcaatccaa |
258 |
Q |
| |
|
||||||||||| || |||| |||||| |
|
|
| T |
14611656 |
catgcgaggtaattggatccatccaa |
14611631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 126 - 319
Target Start/End: Complemental strand, 28558452 - 28558259
Alignment:
| Q |
126 |
gttcccatgcattgcgattcaaatcatcttcatcatgaatatccatggatccagcaatgaacttcaatttattttttgcaccaaaagctcgaatcatgga |
225 |
Q |
| |
|
||||||| ||| | || |||||||||||||||||| |||| ||||| || ||| ||| || |||||||| ||||| || |||||||| |||||||| || |
|
|
| T |
28558452 |
gttcccaggcactacggttcaaatcatcttcatcaggaatctccatagaaccatcaacaaatttcaatttgtttttcgcgccaaaagcacgaatcattga |
28558353 |
T |
|
| Q |
226 |
gcaactccatgcgaggtagtttgatcaatccaatggaggagcaacaataacataattatgtccttcacttggatgaacgtagaaaacagattca |
319 |
Q |
| |
|
| |||||||||||| ||||||| || | |||| |||||| || || ||| | || | |||||||||||||||| |||||| || |||||| |
|
|
| T |
28558352 |
acgactccatgcgagatagtttggtccaaccaagagaggagtaagaagaactgagtttggaccttcacttggatgaatgtagaacactgattca |
28558259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 12299521 - 12299429
Alignment:
| Q |
19 |
ctttgagttctaacaaagcatcaatggcgttttcattgaaaacgagagtttgtgcaatttgaggtgaaacataaatgattatccatgattgaa |
111 |
Q |
| |
|
||||||| |||||| |||||||||||||| ||||| |||||| || ||||| | |||||| || ||||| || |||| ||||||||||||| |
|
|
| T |
12299521 |
ctttgagatctaaccaagcatcaatggcgaattcatggaaaacaagtgtttgagaaatttgtggcgaaactgaattgataatccatgattgaa |
12299429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0257 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 34 - 258
Target Start/End: Complemental strand, 12303 - 12078
Alignment:
| Q |
34 |
aagcatcaatggcgttttcattgaaaacgagagtttgtgcaatttgaggtgaaacataaatgattatccatgattgaagcaaatgattgcaa-gttccca |
132 |
Q |
| |
|
|||| ||||||||| |||||| ||||| | |||||| |||||||||||||||||| | | || ||||||||||||| | |||||| || ||||||| |
|
|
| T |
12303 |
aagcttcaatggcggtttcatgaaaaaccaaagtttgagcaatttgaggtgaaacagagttaataatccatgattgaataagatgatttcatcgttccca |
12204 |
T |
|
| Q |
133 |
tgcattgcgattcaaatcatcttcatcatgaatatccatggatccagcaatgaacttcaatttattttttgcaccaaaagctcgaatcatggagcaactc |
232 |
Q |
| |
|
||| | |||||||||||||| |||||| ||| ||||||||| ||| ||| ||||||||||| || || || || ||||||||||||||||| | | || |
|
|
| T |
12203 |
agcacttcgattcaaatcatcctcatcaggaacatccatggaaccatcaacaaacttcaatttgttcttcgcgcccaaagctcgaatcatggaacgattc |
12104 |
T |
|
| Q |
233 |
catgcgaggtagtttgatcaatccaa |
258 |
Q |
| |
|
||||||||||| || |||| |||||| |
|
|
| T |
12103 |
catgcgaggtaattggatccatccaa |
12078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 73 - 213
Target Start/End: Original strand, 39819 - 39960
Alignment:
| Q |
73 |
caatttgaggtgaaacataaatgattatccatgattgaagcaaatgattgcaag-ttcccatgcattgcgattcaaatcatcttcatcatgaatatccat |
171 |
Q |
| |
|
|||||| ||| | ||||||| |||| ||||| ||||||| ||||||||| ||| |||||| || |||| |||||||| |||||||||| |||| ||||| |
|
|
| T |
39819 |
caatttaaggagtaacataattgataatccaagattgaatcaaatgattacaacattcccacgcgttgcaattcaaataatcttcatcaggaatctccat |
39918 |
T |
|
| Q |
172 |
ggatccagcaatgaacttcaatttattttttgcaccaaaagc |
213 |
Q |
| |
|
||||| |||||||||||||||| || || ||||| ||||| |
|
|
| T |
39919 |
atatccatcaatgaacttcaatttgttcttcgcacctaaagc |
39960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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