View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16647_high_21 (Length: 238)
Name: NF16647_high_21
Description: NF16647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16647_high_21 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 36759482 - 36759266
Alignment:
| Q |
21 |
taaggttttaatagtataggtaaagggagggctgttattggttcacatgaccnnnnnnnnnatacacaaaatattgaaaaatcccattataatatctttt |
120 |
Q |
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| T |
36759482 |
taaggttttaatagtataggtaaagggagggctgttgttggttcacatgacctttttttttatacacaaaatattgaaaaatcccattataatatctttt |
36759383 |
T |
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| Q |
121 |
tactacatcttataaagttagtataattttctaagagaattttcttttgtgggaaaagtgatatataattatgagattgtaaattgagtgtgtaaactca |
220 |
Q |
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| T |
36759382 |
tactacatcttataaagttagtataattttctaagagaattttcttttgtaggaaaagtgatatataatta-gagattgcaaattgagtgtgtaaactca |
36759284 |
T |
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| Q |
221 |
gcataggtgctaagaatt |
238 |
Q |
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|||||||||||||||||| |
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| T |
36759283 |
gcataggtgctaagaatt |
36759266 |
T |
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