View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16647_high_25 (Length: 214)
Name: NF16647_high_25
Description: NF16647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16647_high_25 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 37571445 - 37571658
Alignment:
| Q |
1 |
tcttggaaatttatcagctactgtttagatgagcttatttgggtaatgggcaggacaccatattttggacagacaaactgtctggtggacagtaacttta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37571445 |
tcttggaaatttatcagctactgtttagatgagcttatttgggtaatgggcaggacaccatattttggacagacaaactgtctggtggacagtaacttta |
37571544 |
T |
|
| Q |
101 |
ctcttaaagatcaaagaagattacatttcaaatttgatttgattcaaaaatgtaaaattatacatatgtt---nnnnnnntcaattatttgattaataaa |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
37571545 |
ctcttaaagatcaaagaagattacatttcaaatttgatttgattcaaaaatgtaaaattat--atatgttaaaaaaaaaatcaattatttgattaataaa |
37571642 |
T |
|
| Q |
198 |
agtagggaactgaaaa |
213 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
37571643 |
agtagggaactgaaaa |
37571658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University