View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16647_high_6 (Length: 450)
Name: NF16647_high_6
Description: NF16647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16647_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 25 - 433
Target Start/End: Original strand, 37572119 - 37572527
Alignment:
| Q |
25 |
gtaatcaatcagtgaaagaaagtttttgaagaaccatgttcagaaaaattctcttgttgttgtcttttttctgataatttcttcagcagagagaattgtt |
124 |
Q |
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| T |
37572119 |
gtaatcaatcagtgaaagaaagtttttgaagaaccatgttcagaaaaattctcttgttgttgtcttttttctgataatttcttcagcagagagaattgtt |
37572218 |
T |
|
| Q |
125 |
ccatggagaaaacacagtaacctcgttcacaaagctttgtttgtgcaaccggtgagttcaccagaatctgcaaagcttggtttcttttcagcttctccaa |
224 |
Q |
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| T |
37572219 |
ccatggagaaaacacagtaacctcgttcacaaagctttgtttgtgcaaccggtgagttcaccagaatctgcaaagcttggtttcttttcagcttctccaa |
37572318 |
T |
|
| Q |
225 |
gtcatcaaaaacaccaccagaagcagtagttccaccaccgccgtagccgacaccgtaagaaggcattgattgaagaacagataactgtgcctgcaaaaac |
324 |
Q |
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| T |
37572319 |
gtcatcaaaaacaccaccagaagcagtagttccaccaccgccgtagccgacaccgtaagaaggcattgattgaagaacagataactgtgcctgcaaaaac |
37572418 |
T |
|
| Q |
325 |
ttaacatatttgtaagcttcttcataaagagtagcttgatccattctcttgtcccatggcattagtttctgaagacagcgtgttttctcgcttagttttt |
424 |
Q |
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| T |
37572419 |
ttaacgtatttgtaagcttcttcataaagagtagcttgatccattctcttgtcccatggcattagtttctgaagacagcgtgttttctcgcttagttttt |
37572518 |
T |
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| Q |
425 |
gtcttcttt |
433 |
Q |
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| T |
37572519 |
gtcttcttt |
37572527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 78 - 241
Target Start/End: Complemental strand, 37221283 - 37221120
Alignment:
| Q |
78 |
ttgttgttgtcttttttctgataatttcttcagcagagagaattgttccatggagaaaacacagtaacctcgttcacaaagctttgtttgtgcaaccggt |
177 |
Q |
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||||||||||||||| | ||||||||| | |||| ||||||||||||||||||||||||||| |||| | |||||||||||||||||| |||||| ||| |
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| T |
37221283 |
ttgttgttgtcttttctatgataattttctgagcaaagagaattgttccatggagaaaacacaataacattgttcacaaagctttgtttttgcaactggt |
37221184 |
T |
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| Q |
178 |
gagttcaccagaatctgcaaagcttggtttcttttcagcttctccaagtcatcaaaaacaccac |
241 |
Q |
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| T |
37221183 |
gagttcaccaaaatctgtaatgcttggtttctgttcagcttctccaagtcatcaaaaacaccac |
37221120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 377 - 433
Target Start/End: Complemental strand, 37221093 - 37221037
Alignment:
| Q |
377 |
cccatggcattagtttctgaagacagcgtgttttctcgcttagtttttgtcttcttt |
433 |
Q |
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||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||| |
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| T |
37221093 |
cccatggcattagtttctgaagacaacatgttttctcgcttagattttgtcttcttt |
37221037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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