View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16647_high_8 (Length: 431)

Name: NF16647_high_8
Description: NF16647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16647_high_8
NF16647_high_8
[»] chr1 (5 HSPs)
chr1 (15-414)||(26306810-26307188)
chr1 (291-328)||(40158420-40158457)
chr1 (302-343)||(29230062-29230103)
chr1 (302-330)||(6557279-6557307)
chr1 (291-327)||(43609828-43609864)
[»] chr4 (8 HSPs)
chr4 (291-329)||(9988709-9988747)
chr4 (291-327)||(683065-683101)
chr4 (292-327)||(8457938-8457973)
chr4 (291-341)||(19262934-19262984)
chr4 (291-353)||(30127684-30127746)
chr4 (293-339)||(31965154-31965200)
chr4 (294-354)||(37496690-37496750)
chr4 (291-327)||(46632847-46632883)
[»] chr8 (4 HSPs)
chr8 (291-327)||(31681840-31681876)
chr8 (296-354)||(26096741-26096799)
chr8 (291-327)||(16994053-16994089)
chr8 (291-327)||(32691756-32691792)
[»] chr7 (6 HSPs)
chr7 (291-354)||(18750862-18750925)
chr7 (291-362)||(37775960-37776031)
chr7 (291-327)||(650532-650568)
chr7 (291-327)||(10893357-10893393)
chr7 (291-327)||(10893879-10893915)
chr7 (291-327)||(44172900-44172936)
[»] chr6 (4 HSPs)
chr6 (291-330)||(18803257-18803296)
chr6 (291-327)||(6284671-6284707)
chr6 (291-327)||(10157997-10158033)
chr6 (291-327)||(10335386-10335422)
[»] chr2 (4 HSPs)
chr2 (291-353)||(1119579-1119641)
chr2 (291-328)||(13558771-13558808)
chr2 (289-376)||(39017301-39017388)
chr2 (295-327)||(44046605-44046637)
[»] chr3 (5 HSPs)
chr3 (291-327)||(9210835-9210871)
chr3 (291-327)||(19323458-19323494)
chr3 (291-327)||(19730219-19730255)
chr3 (291-327)||(19750809-19750845)
chr3 (302-330)||(31207849-31207877)


Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 15 - 414
Target Start/End: Original strand, 26306810 - 26307188
Alignment:
Q  15 cacagacgctgaacacatgaatactactctatgaagcactgacacagacgccgaacacaacaatgacatattgacatggaaagacatgaatgtaacatta 114  Q
    ||||||||| ||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  26306810 cacagacgccgaacacatga---ctactctatgaagcactgacacagacgccgaacacaacaatgacatattgacatggaaagacatgaatgcaacatta 26306906  T
Q  115 acatgtgtcgatgtcgtgttggtaggcactaccatatcatttattatt---gaag--gcataacaaataacatcatgaacatgatgttacaaacatgaat 209  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||| |     ||  |||||||||||||||||||||||||||||||| ||||||||||    
T  26306907 acatgtgtcgatgtcgcgttggtaggcactaccatatcatgtattagtaggctagtagcataacaaataacatcatgaacatgatgttataaacatgaat 26307006  T
Q  210 ttgctgtagcatgacacttatgattgaaggcgtattcgacgtctgacaagtgtcagtgtttgacactgacacggcacatatacatgtgatttcattcaat 309  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||      || |||||||||||||||||||||||||||||||    
T  26307007 ttgctgtagcatgacacttatgattgaaggcgtatccgacgtctgacaagtgtcagtgtt------tgccacggcacatatacatgtgatttcattcaat 26307100  T
Q  310 tatgtcattttctcaaataatcacaggtgtcaatatgtcagtgtcaatgtcgtctccgcgtatgtgttggtgcttcataggacatgataaaccaacatgc 409  Q
    ||||||||||||||||||||||||                 |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  26307101 tatgtcattttctcaaataatcac-----------------tgtcaatgtcgtctccgcgtctgtgttggtgcttcataggacatgattaaccaacatgc 26307183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 328
Target Start/End: Original strand, 40158420 - 40158457
Alignment:
Q  291 acatgtgatttcattcaattatgtcattttctcaaata 328  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  40158420 acatgtgatttcattcatttatgtcattttctcaaata 40158457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 343
Target Start/End: Complemental strand, 29230103 - 29230062
Alignment:
Q  302 cattcaattatgtcattttctcaaataatcacaggtgtcaat 343  Q
    |||||||||||||||||||||||||| || || |||||||||    
T  29230103 cattcaattatgtcattttctcaaattattaccggtgtcaat 29230062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 330
Target Start/End: Original strand, 6557279 - 6557307
Alignment:
Q  302 cattcaattatgtcattttctcaaataat 330  Q
    |||||||||||||||||||||||||||||    
T  6557279 cattcaattatgtcattttctcaaataat 6557307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 43609828 - 43609864
Alignment:
Q  291 acatgtgatttcattcaattatgtcattttctcaaat 327  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  43609828 acatgtgattacattcaattatgttattttctcaaat 43609864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 291 - 329
Target Start/End: Original strand, 9988709 - 9988747
Alignment:
Q  291 acatgtgatttcattcaattatgtcattttctcaaataa 329  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  9988709 acatgtgattacattcaattatgtcattttctcaaataa 9988747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 327
Target Start/End: Complemental strand, 683101 - 683065
Alignment:
Q  291 acatgtgatttcattcaattatgtcattttctcaaat 327  Q
    |||||||||| ||||||||||||||||||||||||||    
T  683101 acatgtgattacattcaattatgtcattttctcaaat 683065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 327
Target Start/End: Complemental strand, 8457973 - 8457938
Alignment:
Q  292 catgtgatttcattcaattatgtcattttctcaaat 327  Q
    ||||||||| ||||||||||||||||||||||||||    
T  8457973 catgtgattacattcaattatgtcattttctcaaat 8457938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 341
Target Start/End: Original strand, 19262934 - 19262984
Alignment:
Q  291 acatgtgatttcattcaattatgtcattttctcaaataatcacaggtgtca 341  Q
    |||||||||| |||||||||||||||| ||||||||| || || |||||||    
T  19262934 acatgtgattacattcaattatgtcatcttctcaaattattactggtgtca 19262984  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 353
Target Start/End: Original strand, 30127684 - 30127746
Alignment:
Q  291 acatgtgatttcattcaattatgtcattttctcaaataatcacaggtgtcaatatgtcagtgt 353  Q
    ||||||| || |||||||| || |||||||||||||  |||||| ||||| ||||||||||||    
T  30127684 acatgtggttacattcaataatttcattttctcaaactatcacatgtgtcgatatgtcagtgt 30127746  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 339
Target Start/End: Original strand, 31965154 - 31965200
Alignment:
Q  293 atgtgatttcattcaattatgtcattttctcaaataatcacaggtgt 339  Q
    |||||||| ||||||||||||||||||| ||||||||| || |||||    
T  31965154 atgtgattgcattcaattatgtcattttttcaaataattactggtgt 31965200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 354
Target Start/End: Complemental strand, 37496750 - 37496690
Alignment:
Q  294 tgtgatttcattcaattatgtcattttctcaaataatcacaggtgtcaatatgtcagtgtc 354  Q
    ||||||| |||| |||||||||||||||||||| ||| |  ||||||||  ||||||||||    
T  37496750 tgtgattacattgaattatgtcattttctcaaaaaattatcggtgtcaacgtgtcagtgtc 37496690  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 46632847 - 46632883
Alignment:
Q  291 acatgtgatttcattcaattatgtcattttctcaaat 327  Q
    |||||||||| ||||||||||||||||||| ||||||    
T  46632847 acatgtgattacattcaattatgtcattttgtcaaat 46632883  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 31681840 - 31681876
Alignment:
Q  291 acatgtgatttcattcaattatgtcattttctcaaat 327  Q
    |||||||||||||||||||||||||||||||| ||||    
T  31681840 acatgtgatttcattcaattatgtcattttcttaaat 31681876  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 354
Target Start/End: Original strand, 26096741 - 26096799
Alignment:
Q  296 tgatttcattcaattatgtcattttctcaaataatcacaggtgtcaatatgtcagtgtc 354  Q
    ||||| ||||||||| | ||||||||| |||| |||||||||||| || ||||||||||    
T  26096741 tgattacattcaattttctcattttcttaaattatcacaggtgtcgatttgtcagtgtc 26096799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 327
Target Start/End: Complemental strand, 16994089 - 16994053
Alignment:
Q  291 acatgtgatttcattcaattatgtcattttctcaaat 327  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  16994089 acatgtgattacattcaattctgtcattttctcaaat 16994053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 327
Target Start/End: Complemental strand, 32691792 - 32691756
Alignment:
Q  291 acatgtgatttcattcaattatgtcattttctcaaat 327  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  32691792 acatgtgattacattcaattatgtcattttcttaaat 32691756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 354
Target Start/End: Complemental strand, 18750925 - 18750862
Alignment:
Q  291 acatgtgatttcattcaattatgtcattttctcaaataatcacaggtgtcaatatgtcagtgtc 354  Q
    |||||||||| ||||||||||||||||||||| |||| || || | |||| || ||||||||||    
T  18750925 acatgtgattacattcaattatgtcattttcttaaattattaccgttgtcgatgtgtcagtgtc 18750862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 362
Target Start/End: Complemental strand, 37776031 - 37775960
Alignment:
Q  291 acatgtgatttcattcaattatgtcattttctcaaataatcacaggtgtcaatatgtcagtgtcaatgtcgt 362  Q
    |||||||||| |||| ||||||||||||||||||||| |  || |||||| || ||||| ||||| ||||||    
T  37776031 acatgtgattacatttaattatgtcattttctcaaattactactggtgtcgatttgtcaatgtcagtgtcgt 37775960  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 327
Target Start/End: Complemental strand, 650568 - 650532
Alignment:
Q  291 acatgtgatttcattcaattatgtcattttctcaaat 327  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  650568 acatgtgattgcattcaattatgtcattttcttaaat 650532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 10893357 - 10893393
Alignment:
Q  291 acatgtgatttcattcaattatgtcattttctcaaat 327  Q
    ||||| |||| ||||||||||||||||||||||||||    
T  10893357 acatgcgattacattcaattatgtcattttctcaaat 10893393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 10893879 - 10893915
Alignment:
Q  291 acatgtgatttcattcaattatgtcattttctcaaat 327  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  10893879 acatgtgattacattcaattatgtcattttcttaaat 10893915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 44172900 - 44172936
Alignment:
Q  291 acatgtgatttcattcaattatgtcattttctcaaat 327  Q
    |||||||||| |||| |||||||||||||||||||||    
T  44172900 acatgtgattacattgaattatgtcattttctcaaat 44172936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 330
Target Start/End: Complemental strand, 18803296 - 18803257
Alignment:
Q  291 acatgtgatttcattcaattatgtcattttctcaaataat 330  Q
    |||||||||| ||||||||||||| |||||||||||||||    
T  18803296 acatgtgattacattcaattatgtaattttctcaaataat 18803257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 6284671 - 6284707
Alignment:
Q  291 acatgtgatttcattcaattatgtcattttctcaaat 327  Q
    ||||||||||  |||||||||||||||||||||||||    
T  6284671 acatgtgattaaattcaattatgtcattttctcaaat 6284707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 327
Target Start/End: Complemental strand, 10158033 - 10157997
Alignment:
Q  291 acatgtgatttcattcaattatgtcattttctcaaat 327  Q
    |||||||||| |||| |||||||||||||||||||||    
T  10158033 acatgtgattacattgaattatgtcattttctcaaat 10157997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 10335386 - 10335422
Alignment:
Q  291 acatgtgatttcattcaattatgtcattttctcaaat 327  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  10335386 acatctgattacattcaattatgtcattttctcaaat 10335422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 353
Target Start/End: Original strand, 1119579 - 1119641
Alignment:
Q  291 acatgtgatttcattcaattatgtcattttctcaaataatcacaggtgtcaatatgtcagtgt 353  Q
    |||||||| | ||||||||||| ||||||||| |||| ||||| |||||| | ||||||||||    
T  1119579 acatgtgactacattcaattatatcattttcttaaatcatcaccggtgtcgacatgtcagtgt 1119641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 328
Target Start/End: Original strand, 13558771 - 13558808
Alignment:
Q  291 acatgtgatttcattcaattatgtcattttctcaaata 328  Q
    |||||||||| |||| ||||||||||||||||||||||    
T  13558771 acatgtgattgcattaaattatgtcattttctcaaata 13558808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 376
Target Start/End: Complemental strand, 39017388 - 39017301
Alignment:
Q  289 atacatgtgatttcattcaattatgtcattttctcaaataatcacaggtgtcaatatgtcagtgtcaatgtcgtctccg-cgtatgtgt 376  Q
    |||||| ||||| |||||||||||| |||||| |||||| || || ||||  || |||||||||||||||| || |||| |||||||||    
T  39017388 atacatatgattacattcaattatgccatttt-tcaaattattaccggtggtaacatgtcagtgtcaatgttgtgtccgacgtatgtgt 39017301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 327
Target Start/End: Complemental strand, 44046637 - 44046605
Alignment:
Q  295 gtgatttcattcaattatgtcattttctcaaat 327  Q
    |||||| ||||||||||||||||||||||||||    
T  44046637 gtgattgcattcaattatgtcattttctcaaat 44046605  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 9210835 - 9210871
Alignment:
Q  291 acatgtgatttcattcaattatgtcattttctcaaat 327  Q
    |||||||||| |||| |||||||||||||||||||||    
T  9210835 acatgtgattccattgaattatgtcattttctcaaat 9210871  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 19323458 - 19323494
Alignment:
Q  291 acatgtgatttcattcaattatgtcattttctcaaat 327  Q
    ||||||||||  |||||||||||||||||||||||||    
T  19323458 acatgtgattaaattcaattatgtcattttctcaaat 19323494  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 19730219 - 19730255
Alignment:
Q  291 acatgtgatttcattcaattatgtcattttctcaaat 327  Q
    |||||||||  ||||||||||||||||||||||||||    
T  19730219 acatgtgatcacattcaattatgtcattttctcaaat 19730255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 19750809 - 19750845
Alignment:
Q  291 acatgtgatttcattcaattatgtcattttctcaaat 327  Q
    |||||||||  ||||||||||||||||||||||||||    
T  19750809 acatgtgatcacattcaattatgtcattttctcaaat 19750845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 330
Target Start/End: Complemental strand, 31207877 - 31207849
Alignment:
Q  302 cattcaattatgtcattttctcaaataat 330  Q
    |||||||||||||||||||||||||||||    
T  31207877 cattcaattatgtcattttctcaaataat 31207849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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