View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16647_high_9 (Length: 386)
Name: NF16647_high_9
Description: NF16647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16647_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 15 - 260
Target Start/End: Original strand, 44552271 - 44552515
Alignment:
| Q |
15 |
atgaaacctactacattttaaattaagtatcttcttttgcagtgattaagggtgcgtttaaaaataattacaagtgataattagataatgtgacataact |
114 |
Q |
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| T |
44552271 |
atgaaacctactacgttttaaattaagtatcttcttttgcagtgattaagggtgcgtttaaaaataattacaagtgatatttagataatgtgacataact |
44552370 |
T |
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| Q |
115 |
cgtaattctattgaccatgaacgtgacctacaaaaaccagttgtgtctttcgttatttggctagactcgcggataatatgtgtagttatgaccgctatcg |
214 |
Q |
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| T |
44552371 |
cgtaattctattgaccatgaacgtgacctacaaaaactagttgtgtctttcgttatttggttagactcgcggataatgtgtgtagttatgaccgctatcg |
44552470 |
T |
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| Q |
215 |
ggataaacttggtgccctatatttgtaattaaaatgggttggttga |
260 |
Q |
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| T |
44552471 |
ggat-aacttggtgccctatatttgtaattaaaatgggttggttga |
44552515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 260 - 374
Target Start/End: Original strand, 44552540 - 44552654
Alignment:
| Q |
260 |
aatggattgttagctatagtttattgatggctgcattttgtgaggaagggaggatataagattgtggctagttgtggaaagaaatgataaggaaattgaa |
359 |
Q |
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| T |
44552540 |
aatggattgttagctatagtttattgatggctgcattttgtgaggaagggaggatataagattgtgggtagttgtggaaagaaatgataaggaaattgag |
44552639 |
T |
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| Q |
360 |
acttatgtgataagt |
374 |
Q |
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| T |
44552640 |
ccttatgtgataagt |
44552654 |
T |
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