View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16647_low_1 (Length: 669)
Name: NF16647_low_1
Description: NF16647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16647_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 584; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 15 - 662
Target Start/End: Original strand, 14166358 - 14167006
Alignment:
| Q |
15 |
agtttccttggccacaacatgctcaagaagaacactgtttcttttgtagtaaacatctgagatgacttttaggtcatgctgagctctgctcacaatcaca |
114 |
Q |
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| T |
14166358 |
agtttccttggccacaacatgctcaagaagaacactgtttcttttgtagtaaacatctgagatgacttttaggtcatgctgagctctgctcacaatcaca |
14166457 |
T |
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| Q |
115 |
cgggtgagcgcatcctcatcggttccaaccttcttgattgcatctcgcaccacctacaatatgatcagaaaatgtaaagtt-aaatcattgtagtaacaa |
213 |
Q |
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| T |
14166458 |
cgggtcagcgcatcctcatcagttccaaccttcttgattgcatctcgcaccacctacgatttgatcagaaaatgtaaagttcaaatcattgtagtaacaa |
14166557 |
T |
|
| Q |
214 |
tattttgtggacatggtaaagcattttataacgagagtgtatcaaaattaaactctagaagaacattttatgaatggttccgatttgttttcaatgtaca |
313 |
Q |
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| T |
14166558 |
tattttgtggacatggtaaagcattttataacgagagtgtatcaaaattaaactctagaagaacattttatgaatggttccgatttgttttcaatgtaca |
14166657 |
T |
|
| Q |
314 |
acttttacctagacaatgtagcaaaattaaattcatcgcagaaaaatgtgagagatctaccttttcatagtacttaacatgatcattgaagctacggatg |
413 |
Q |
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| T |
14166658 |
acttttacctagacaatgtatcaaaattaaattcatcgcagaaaaatgtgagagatctaccttttcatagtacttaacatgatcattgaagctacggatg |
14166757 |
T |
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| Q |
414 |
gtggtatacaatgccttctgaaattcatcagatccttcatccaacagcttctgtaaagattaaacggacacaaatttaaataacgagttataatatcata |
513 |
Q |
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| T |
14166758 |
gtggtatacaatgccttctgaaattcatcagatccttcatccaacagcttctgtaaagattaaacggacacaaatttaaataacgaatcataatatcata |
14166857 |
T |
|
| Q |
514 |
annnnnnnaatatcgtaatctttttattatataccttagtgatggaagtaccatgagtctctctgtagcggttgaatgtcgcaatcagctgggttttgct |
613 |
Q |
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| T |
14166858 |
atttttttaatatcgtaatctttttattatataccttagtgatggaagtaccatgagtctctctgtagcggttgaatgtcgcaatcagctgggttttgct |
14166957 |
T |
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| Q |
614 |
ccttgtagtcaagatcctaatggcttcttcatgacttcctttcttctct |
662 |
Q |
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| T |
14166958 |
ccttgtagtcaagatccttatggcttcttcatggcttcctttcttctct |
14167006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 573 - 662
Target Start/End: Original strand, 14173880 - 14173969
Alignment:
| Q |
573 |
tctctgtagcggttgaatgtcgcaatcagctgggttttgctccttgtagtcaagatcctaatggcttcttcatgacttcctttcttctct |
662 |
Q |
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| T |
14173880 |
tctctgtagcggttgaaagttgccaaaagctgagtcttgctccttgtagtaaggattctaatggcttcttcatgatttccttttttctct |
14173969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 271
Target Start/End: Original strand, 11189277 - 11189310
Alignment:
| Q |
238 |
tttataacgagagtgtatcaaaattaaactctag |
271 |
Q |
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| T |
11189277 |
tttataccgagagtgtatcaaaattaaactctag |
11189310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 143
Target Start/End: Complemental strand, 5189592 - 5189555
Alignment:
| Q |
106 |
acaatcacacgggtgagcgcatcctcatcggttccaac |
143 |
Q |
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| T |
5189592 |
acaatcacacgggtgagtgcatcctcatcggttccaac |
5189555 |
T |
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