View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16647_low_12 (Length: 349)
Name: NF16647_low_12
Description: NF16647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16647_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 129; Significance: 1e-66; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 12 - 165
Target Start/End: Original strand, 28088782 - 28088935
Alignment:
| Q |
12 |
ataggtggcacttttgttttgtttcctcaacgtgtaaacttggtctctaataaattttcactgtttcgaaaagnnnnnnngttacaaatactatatagcc |
111 |
Q |
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| T |
28088782 |
ataggtggcacttttgttttgtttcctcaacgtgtaaacttggtctctaataaattttcactgtttcgaaaagaaaaaaagttacagatactatatagcc |
28088881 |
T |
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| Q |
112 |
tatttgcagatgcaaaacttagattatatgtatgtgcatgttgaacatgaggat |
165 |
Q |
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| T |
28088882 |
tatttgcagatgcaaaacttagattatatgtatgtgcatgttgaacatgaggat |
28088935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 177 - 288
Target Start/End: Original strand, 28089009 - 28089120
Alignment:
| Q |
177 |
cctttcttaagatgaatgcgctgttctctttattgttcaagtatttatgcatggagattggtttaagatagtcggccaaaggtattgcgctgccgacaca |
276 |
Q |
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| T |
28089009 |
cctttcttaagatgaatgcgctgttctctttattgttcaagtatttatgcatggagattggtttaagatagtcggccaaaggtattgcgctgccgacaca |
28089108 |
T |
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| Q |
277 |
tgacaatagaga |
288 |
Q |
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| T |
28089109 |
tgacaatagaga |
28089120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 187 - 282
Target Start/End: Original strand, 28093592 - 28093687
Alignment:
| Q |
187 |
gatgaatgcgctgttctctttattgttcaagtatttatgcatggagattggtttaagatagtcggccaaaggtattgcgctgccgacacatgacaa |
282 |
Q |
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| T |
28093592 |
gatgaatgcactgttctgtttattgttcaagaatttatgcatggagattggtttaagatagtcggtcaaaggtattgcactgccgacacatgacaa |
28093687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 92 - 165
Target Start/End: Complemental strand, 26641773 - 26641696
Alignment:
| Q |
92 |
gttacaaatactatatagcctatttgcagatgcaaaacttagatta----tatgtatgtgcatgttgaacatgaggat |
165 |
Q |
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| T |
26641773 |
gttacaaatactatttagcctatttgcagatgcaaaacttagattataagtatgtatgtgcatgttgaacatggggat |
26641696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 92 - 160
Target Start/End: Complemental strand, 28104726 - 28104654
Alignment:
| Q |
92 |
gttacaaatactatatagcctatttgcagatgcaaaacttagatta----tatgtatgtgcatgttgaacatg |
160 |
Q |
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| T |
28104726 |
gttacaaatactatttagcctatttgcagatgcaaaacttagattataagtatgtatgtgcatgttgaacatg |
28104654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 287 - 333
Target Start/End: Original strand, 28089103 - 28089149
Alignment:
| Q |
287 |
gacacatgacaatagagaagcaatcatctatttttcttttgtccctt |
333 |
Q |
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| T |
28089103 |
gacacatgacaatagagaagcaatcatctatttttcttttgtccctt |
28089149 |
T |
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