View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16647_low_13 (Length: 337)
Name: NF16647_low_13
Description: NF16647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16647_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 11 - 335
Target Start/End: Original strand, 36941616 - 36941940
Alignment:
| Q |
11 |
tcatgaagatccttagtccatctaattcttgttttacttgaaactacattcccactagaagaagtgcttccaagagaagttgataaacttcctgctgaaa |
110 |
Q |
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| T |
36941616 |
tcatgaagatccttagtccatctaattcttgttttacttgaaactacattcccactagaagaagtgcttccaagagaagttgataaacttcctgctgaaa |
36941715 |
T |
|
| Q |
111 |
ttgttggagacaacttctcatgctgagaagagaaattcagttgctcgactgataaatgataagatccacgagcaacctgcaaacggatgctataattaga |
210 |
Q |
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| T |
36941716 |
ttgttggagacaacttctcatgctgagaagagaaattcagttgctcgactgataaatgataagatccacgagcaacctgcaaacggatgctataattaga |
36941815 |
T |
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| Q |
211 |
catgtgattcattgatgtatgcctaatgtgatacaatgatttatgttacatgttattgatgctcaataattgaatacaaaaaagtataaagcgtaactac |
310 |
Q |
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| T |
36941816 |
catgtgattcattgatgtatgcctaatgtgatacaatgatttatgttacatgttattgatgctcaataattgaatacaaaaaagtataaagcgtaactac |
36941915 |
T |
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| Q |
311 |
tatatattctttcaacgatttcttc |
335 |
Q |
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| T |
36941916 |
tatatattcttgcaacgatttcttc |
36941940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 323
Target Start/End: Complemental strand, 8935400 - 8935296
Alignment:
| Q |
220 |
cattgatgtatgcctaatgtgatacaatgattta-tgttacatgttattgatgctcaataattgaatacaaaaaagtataaagcgtaactactatatatt |
318 |
Q |
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| T |
8935400 |
cattgatatatgcctaatgtgaaactacgatttactgttaaatgtcattgctgctcaataaatgaacacaacacattataaattgtaactaatgtagatt |
8935301 |
T |
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| Q |
319 |
ctttc |
323 |
Q |
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||||| |
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| T |
8935300 |
ctttc |
8935296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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