View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16647_low_14 (Length: 335)
Name: NF16647_low_14
Description: NF16647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16647_low_14 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 7 - 335
Target Start/End: Original strand, 32330985 - 32331308
Alignment:
| Q |
7 |
acaagctgtagagtgaaattatatatatcgttctcataagaatctatgaattgaatgcctattaaagctagttatagactcgtaaattgatagaagttca |
106 |
Q |
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| T |
32330985 |
acaagctgtagagtgaaattgtatatatcgttctcataagaatctatgaattgaatgcctattaaagctagttatagactcgtaaattgataggagttca |
32331084 |
T |
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| Q |
107 |
agtaaagcaattaatatatgataatatactgtaaatgcaagtgcaatactannnnnnnnnnnnnnnacaatataatatatgcaagtgcaactactaggtn |
206 |
Q |
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| T |
32331085 |
agtaaagcaattaatatatgataatatactgtaaattcaagtgcaatacta----tgtttttttttacaatataatatatgcaagtgcaactactaggt- |
32331179 |
T |
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| Q |
207 |
nnnnnnntggaaaatactcgtatagttttttcacaaaataatactcatttacatgcttaaggagttagataattacgttatttaatttgtatgagaatta |
306 |
Q |
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| T |
32331180 |
aaaaaaatggaaaatactcgtatatttttttcacaaaataatactcatttacatgcttaaggagttagataattatgttatttaatttgtatgagaattg |
32331279 |
T |
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| Q |
307 |
tgtttttattcatatgtaactcatttttt |
335 |
Q |
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| T |
32331280 |
tgtttttattcatatgtaactcttttttt |
32331308 |
T |
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