View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16647_low_15 (Length: 326)
Name: NF16647_low_15
Description: NF16647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16647_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 37937008 - 37937272
Alignment:
| Q |
1 |
atcattgcagcgagtattgcaccgatgccagtgccggtgatgatgtcaaagtaatcaatgatttgagcgtgaggatcgttggtttgtaagcggatctgat |
100 |
Q |
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| T |
37937008 |
atcattgcagcgagtattgcaccaatgccagtgccggtgatgatgtcaaagtaatcaatgatttgagcgtgaggatcgttggtttgtaagcggatctgat |
37937107 |
T |
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| Q |
101 |
cctcaaggtggatcaaggcagcgccggagacaatggcggtggttcctccgccgtcaatgctgagaatgcgagttttggatgttgttccacattgtgaaac |
200 |
Q |
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| T |
37937108 |
cctcaaggtggatcaaggcagcgccggagacaatggcggtggttcctccgccgtcaatgctgagaatgcgagttttggatgttgttccacattgtgaaac |
37937207 |
T |
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| Q |
201 |
tgatagccattgttgttctagttttgtgaatatctctagtgttactttgctaagctccattagtg |
265 |
Q |
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| T |
37937208 |
tgatagccattgttgttctagttttgtgaatatctctagtgttactttgctaagctccattagtg |
37937272 |
T |
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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 43 - 178
Target Start/End: Complemental strand, 32039858 - 32039723
Alignment:
| Q |
43 |
atgtcaaagtaatcaatgatttgagcgtgaggatcgttggtttgtaagcggatctgatcctcaaggtggatcaaggcagcgccggagacaatggcggtgg |
142 |
Q |
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||||| ||| |||||| || |||||||||||||| |||||| | ||||||||||| || || ||||| || |||||||||| ||||||||||| | |
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| T |
32039858 |
atgtcgaagaaatcaacgacgtgagcgtgaggatcagaggtttgaagacggatctgatcttcgagatggattaaagcagcgccggctacaatggcggttg |
32039759 |
T |
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| Q |
143 |
ttcctccgccgtcaatgctgagaatgcgagttttgg |
178 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
32039758 |
ttcctccgccgtcaatgctgagaatgcgagttttgg |
32039723 |
T |
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